T-Cell Receptor (TCR) Similarity Search on VDJdb random slices (10K sequences)
0.985Recall (AUC)SubQuad
Evaluation results
| Method | Links | |||
|---|---|---|---|---|
| SubQuadThroughput (k seq/s)=97.2, Memory (GB)=1.42026.02 | 0.985 | 92 | 0.91 | |
| BertTCRThroughput (k seq/s)=84.5, Memory (GB)=2.12026.02 | 0.97 | 87 | 0.83 | |
| HeteroTCRThroughput (k seq/s)=75, Memory (GB)=1.62026.02 | 0.95 | 85 | 0.79 | |
| ProtBertThroughput (k seq/s)=62.3, Memory (GB)=3.82026.02 | 0.94 | 79 | 0.75 | |
| GIANAThroughput (k seq/s)=45.7, Memory (GB)=22026.02 | 0.93 | 83 | 0.8 | |
| TCR-pMHC (PyG)Throughput (k seq/s)=60, Memory (GB)=3.52026.02 | 0.92 | 82 | 0.78 | |
| TCR-NETThroughput (k seq/s)=35, Memory (GB)=2.22026.02 | 0.9 | 80 | 0.76 | |
| NAIRThroughput (k seq/s)=15, Memory (GB)=3.32026.02 | 0.85 | 80 | 0.72 | |
| TCRMatchThroughput (k seq/s)=25, Memory (GB)=32026.02 | 0.82 | 78 | 0.72 |