Protein-ligand concept prediction on PLINDER UniProt and system annotations (test)
29.1Token F1PairSAE-R3-L32
Evaluation Results
| Method | Links | ||
|---|---|---|---|
| PairSAE-R3-L32Backbone=Boltz-2, Recycling step=3, Layer=32, Evaluation Mode=Linear probing2026.06 | 29.1 | 53.2 | |
| PairSAE-R3-L64Backbone=Boltz-2, Recycling step=3, Layer=64, Evaluation Mode=Linear probing2026.06 | 24 | 49.6 | |
| ESM2-650MEvaluation Mode=Linear probing, Protocol=Single-threshold classifier2026.06 | 0.8 | 19.7 |