Protein Homolog Retrieval on Pfam clan (test)
93.77cR@1PROTOCOL
Evaluation Results
| Method | Links | ||||
|---|---|---|---|---|---|
| PROTOCOLTraining Status=trained, Scoring Strategy=late interaction2026.05 | 93.77 | 76.3 | 70.65 | 26.49 | |
| ESM-2 650M poolModel Scale=650M, Scoring Strategy=mean-pooled2026.05 | 89.03 | 60.48 | 43.24 | 49.86 | |
| MMseqs22026.05 | 88.33 | 36.27 | 15.39 | 1,050.74 | |
| PROTOCOL-FTraining Status=frozen, Scoring Strategy=late interaction2026.05 | 81.47 | 58.81 | 45.33 | 24.9 | |
| ESM-2 35M uniModel Scale=35M, Scoring Strategy=uni-vector2026.05 | 78.97 | 66.57 | 63.78 | 19.14 | |
| MinHash2026.05 | 49.57 | 16.84 | 11.04 | 3.54 |