Homolog Retrieval on SCOPe superfamily (test)
94.6Coverage Recall @1PROTOCOL
Evaluation Results
| Method | Links | |||
|---|---|---|---|---|
| PROTOCOLLat. (ms)=24.10, Backbone scale=35M, Frozen status=false2026.05 | 94.6 | 89.47 | 87.96 | |
| PROTOCOL-FLat. (ms)=24.33, Backbone scale=35M, Frozen status=true2026.05 | 88.25 | 80.93 | 74.22 | |
| ESM-2 650M poolLat. (ms)=49.58, Backbone scale=650M, Frozen status=true2026.05 | 87.73 | 66.64 | 51.27 | |
| MMseqs2Lat. (ms)=1068.73, Sensitivity=7.52026.05 | 85.78 | 61.77 | 34.21 | |
| ESM-2 35M uniLat. (ms)=20.31, Backbone scale=35M2026.05 | 68.19 | 67.77 | 71.41 | |
| MinHashLat. (ms)=4.23, N-mers=5-mers2026.05 | 31.72 | 19.32 | 15.67 |