Protein dynamics emulation on DynamicPDB 80
100CA%MD (Oracle)
Evaluation results
| Method | Links | |||||||
|---|---|---|---|---|---|---|---|---|
| MD (Oracle)2026.06 | 100 | 100 | 100 | 0.135 | 0.135 | 0.135 | 0.135 | |
| AlphaFlowGeneration Type=Conformation Generation2026.06 | 100 | 100 | 99.99 | 0.122 | 0.122 | 0.122 | 0.122 | |
| Str2StrGeneration Type=Conformation Generation2026.06 | 100 | 100 | 100 | 0.192 | 0.192 | 0.192 | 0.192 | |
| BioEMUGeneration Type=Conformation Generation2026.06 | 99.99 | 99.97 | 99.99 | 0.234 | 0.234 | 0.234 | 0.234 | |
| EmulatorGeneration Type=Trajectory Generation, Implicit Bias=false2026.06 | 99.82 | 98.43 | 99.51 | 0.185 | 0.185 | 0.184 | 0.181 | |
| Emulator + Implicit BiasGeneration Type=Trajectory Generation, Implicit Bias=true2026.06 | 98.37 | 95.82 | 98.87 | 0.313 | 0.289 | 0.252 | 0.245 | |
| ConfRoverGeneration Type=Trajectory Generation, Implicit Bias=false2026.06 | 97.47 | 96.89 | 99.26 | 0.182 | 0.182 | 0.181 | 0.179 | |
| ConfRover + Implicit BiasGeneration Type=Trajectory Generation, Implicit Bias=true2026.06 | 96.91 | 96.34 | 99.37 | 0.221 | 0.221 | 0.222 | 0.212 | |
| MDGENGeneration Type=Trajectory Generation2026.06 | 84.52 | 68.51 | 97.57 | 0.353 | 0.193 | 0.171 | 0.17 |