Named Entity Recognition on BC5CDR (Entity Type Recall)
94.4Total F1BioLM-large + RegLER
Evaluation results
| Method | Links | ||||
|---|---|---|---|---|---|
| BioLM-large + RegLERSubword frequency=true, Class prior=true, Bias-weighted scaling=true2021.04 | 94.4 | 98.7 | 90.3 | 89.1 | |
| SciFive-base2021.04 | 94.2 | — | — | — | |
| BioLM-large + BPSubword frequency=false, Class prior=false, Bias-weighted scaling=false2021.04 | 94.2 | 98.4 | 89.5 | 88.9 | |
| BioLM-largeSubword frequency=false, Class prior=false, Bias-weighted scaling=false2021.04 | 94.1 | 98.3 | 88.4 | 89 | |
| PubmedBERT + RegLERSubword frequency=true, Class prior=true, Bias-weighted scaling=true2021.04 | 93.8 | 98.5 | 85.8 | 87.1 | |
| BioFLAIR2021.04 | 93.5 | — | — | — | |
| KeBioLM2021.04 | 93.3 | — | — | — | |
| PubmedBERTSubword frequency=false, Class prior=false, Bias-weighted scaling=false2021.04 | 93.3 | 98.2 | 85.2 | 86 | |
| PubmedBERT + BPSubword frequency=false, Class prior=false, Bias-weighted scaling=false2021.04 | 93.3 | 98 | 87.1 | 86.8 | |
| BioLM-base + RegLERSubword frequency=true, Class prior=true, Bias-weighted scaling=true2021.04 | 93.2 | 98.7 | 90 | 88.9 | |
| BioLM-base + BPSubword frequency=false, Class prior=false, Bias-weighted scaling=false2021.04 | 92.9 | 97.8 | 89.9 | 88.6 | |
| BioLM-baseSubword frequency=false, Class prior=false, Bias-weighted scaling=false2021.04 | 92.8 | 98.6 | 89.6 | 88.6 | |
| BioBERT + RegLERSubword frequency=true, Class prior=true, Bias-weighted scaling=true2021.04 | 92.3 | 97.1 | 83.8 | 88.2 | |
| BioBERTSubword frequency=false, Class prior=false, Bias-weighted scaling=false2021.04 | 92.1 | 97.2 | 82.9 | 86.9 | |
| BioBERT + BPSubword frequency=false, Class prior=false, Bias-weighted scaling=false2021.04 | 92 | 96.8 | 83.1 | 88 | |
| SciBERT + RegLERSubword frequency=true, Class prior=true, Bias-weighted scaling=true2021.04 | 91.8 | 97.1 | 78 | 84.4 | |
| SciBERT + BPSubword frequency=false, Class prior=false, Bias-weighted scaling=false2021.04 | 91.5 | 97.2 | 76.4 | 84.4 | |
| SciBERTSubword frequency=false, Class prior=false, Bias-weighted scaling=false2021.04 | 91.4 | 97.2 | 76.5 | 83.5 |