Link Prediction on Pubmed (test)
99.68AUCBES
Evaluation results
| Method | Links | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| BES2026.06 | 99.68 | — | — | — | — | — | — | 97.89 | |
| MotifRGC-GAT2026.06 | 99.58 | — | — | — | — | — | — | 97.64 | |
| MotifRGC-SAGE2026.06 | 99.44 | — | — | — | — | — | — | 97.52 | |
| lrGAE 7Method category=Structure-based2024.10 | 98.9 | 98.8 | — | — | — | — | — | — | |
| H2GNN2026.06 | 98.81 | — | — | — | — | — | — | 95.79 | |
| lrGAE 8Method category=Structure-based2024.10 | 98.8 | 98.4 | — | — | — | — | — | — | |
| MaskGAEMethod category=Structure-based2024.10 | 98.7 | 98.8 | — | — | — | — | — | — | |
| SGNN2026.06 | 98.35 | — | — | — | — | — | — | 94.72 | |
| NBFNetNode Embeddings=None2022.10 | 98.3 | 98.15 | — | — | — | — | — | — | |
| S2GAEMethod category=Structure-based2024.10 | 98.3 | 98.2 | — | — | — | — | — | — | |
| GDGNN-VertNode Embeddings=None, Aggregation=Vertical2022.10 | 98.16 | 98.17 | — | — | — | — | — | — | |
| lrGAE 6Method category=Structure-based2024.10 | 98.1 | 97.7 | — | — | — | — | — | — | |
| GAEMethod category=Structure-based2024.10 | 98 | 98.1 | — | — | — | — | — | — | |
| GraphECL2026.06 | 98 | — | — | — | — | — | — | 94.19 | |
| GCN2026.06 | 97.87 | — | — | — | — | — | — | 93.8 | |
| MotifRGC-GCN2026.06 | 97.87 | — | — | — | — | — | — | 93.51 | |
| GDGNN-HorNode Embeddings=None, Aggregation=Horizontal2022.10 | 97.83 | 98.1 | — | — | — | — | — | — | |
| SEALNode Embeddings=None2022.10 | 97.78 | 97.9 | — | — | — | — | — | — | |
| SeeGeraMethod category=Feature-based2024.10 | 97.6 | 97.8 | — | — | — | — | — | — | |
| GiGaMAEMethod category=Feature-based2024.10 | 97.5 | 97.3 | — | — | — | — | — | — | |
| N-VGAELatent Distribution=Normal, Scoring Function=Dot Product2018.04 | 97.1 | 97.1 | — | — | — | — | — | — | |
| BaseMerging Partner=Arxiv-NC2026.06 | 97.05 | — | — | — | — | — | — | — | |
| BaseMerging Partner=WikiCS-NC2026.06 | 97.05 | — | — | — | — | — | — | — | |
| H2H-GCN2021.12 | 96.9 | — | — | — | — | — | — | — | |
| NHGCN2021.12 | 96.9 | — | — | — | — | — | — | — | |
| Full FeaturesMissing Rate (mr)=0, Missing Type=None2026.01 | 96.88 | 97.13 | — | — | — | — | — | — | |
| ARGE2019.08 | 96.8 | 97.1 | — | — | — | — | — | — | |
| BGRLMethod category=Standard GCL2024.10 | 96.8 | 96.4 | — | — | — | — | — | — | |
| LGCN2021.12 | 96.6 | — | — | — | — | — | — | — | |
| GCN-MPPRMotif Type=M32026.02 | 96.54 | 93.76 | — | — | — | — | — | — | |
| GCN-MPPRMotif Type=M52026.02 | 96.54 | 93.77 | — | — | — | — | — | — | |
| GCN-MPPRMotif Type=M12026.02 | 96.53 | 93.75 | — | — | — | — | — | — | |
| GCN-MPPRMotif Type=M22026.02 | 96.53 | 93.76 | — | — | — | — | — | — | |
| GCN-MPPRMotif Type=M62026.02 | 96.52 | 93.74 | — | — | — | — | — | — | |
| GCN-MPPRMotif Type=M72026.02 | 96.52 | 93.74 | — | — | — | — | — | — | |
| GCN-MPPRMotif Type=Mean2026.02 | 96.52 | 93.73 | — | — | — | — | — | — | |
| ARVGE2019.08 | 96.5 | 96.8 | — | — | — | — | — | — | |
| GCN-MPPRMotif Type=M42026.02 | 96.43 | 93.56 | — | — | — | — | — | — | |
| GAEInput Features=true2016.11 | 96.4 | 96.5 | — | — | — | — | — | — | |
| GAE2019.08 | 96.4 | 96.5 | — | — | — | — | — | — | |
| GAE2019.10 | 96.4 | 96.5 | — | — | — | — | — | — | |
| HYBONET2021.12 | 96.4 | — | — | — | — | — | — | — | |
| GNNMERGEMerging Partner=WikiCS-NC2026.06 | 96.37 | — | — | — | — | — | — | — | |
| HGCN2021.12 | 96.3 | — | — | — | — | — | — | — | |
| GNNMERGEMerging Partner=Arxiv-NC2026.06 | 96.23 | — | — | — | — | — | — | — | |
| RWR-GAE2019.08 | 96.2 | 96.3 | — | — | — | — | — | — | |
| PPNP2026.02 | 96.06 | 93.17 | — | — | — | — | — | — | |
| SSGC2026.06 | 96.05 | — | — | — | — | — | — | 89.04 | |
| S-VGAELatent Distribution=Hyperspherical, Scoring Function=Cosine Similarity (Dot Product on surface)2018.04 | 96 | 96 | — | — | — | — | — | — | |
| GraphMAEMethod category=Feature-based2024.10 | 95.9 | 95.5 | — | — | — | — | — | — | |
| GCN2026.02 | 95.82 | 93.14 | — | — | — | — | — | — | |
| S3GCLMethod category=Standard GCL2024.10 | 95.8 | 95.3 | — | — | — | — | — | — | |
| GraphMAE2Method category=Feature-based2024.10 | 95.6 | 95.2 | — | — | — | — | — | — | |
| GAE2026.02 | 95.35 | 95.97 | — | — | — | — | — | — | |
| RWR-VGAE2019.08 | 95.3 | 95.2 | — | — | — | — | — | — | |
| GAT2026.06 | 95.3 | — | — | — | — | — | — | 89.52 | |
| GGDMethod category=Standard GCL2024.10 | 95.1 | 94.7 | — | — | — | — | — | — | |
| SGC2026.06 | 95.1 | — | — | — | — | — | — | 86.43 | |
| RResNet HoroModel Type=Deep2023.10 | 95 | — | — | — | — | — | — | — | |
| HNNModel Type=Deep2023.10 | 94.9 | — | — | — | — | — | — | — | |
| (s)Graphite-VAEenhancement=neighborhood enlargement2019.05 | 94.8 | — | — | — | — | — | — | — | |
| GATv22026.06 | 94.71 | — | — | — | — | — | — | 88.55 | |
| VGAE2026.02 | 94.69 | 95.33 | — | — | — | — | — | — | |
| GraphSAGE2026.06 | 94.69 | — | — | — | — | — | — | 88.68 | |
| MPNN-GCN2026.06 | 94.68 | — | — | — | — | — | — | 86.46 | |
| Cheb2026.06 | 94.64 | — | — | — | — | — | — | 87.08 | |
| Graphite-VAE2019.05 | 94.6 | — | — | — | — | — | — | — | |
| CCA-SSGMethod category=Standard GCL2024.10 | 94.6 | 94.2 | — | — | — | — | — | — | |
| KernelGCN2019.10 | 94.5 | 94.2 | — | — | — | — | — | — | |
| AUG-MAEMethod category=Feature-based2024.10 | 94.5 | 94 | — | — | — | — | — | — | |
| IGCL2026.06 | 94.48 | — | — | — | — | — | — | 88.81 | |
| VGAEInput Features=true2016.11 | 94.4 | 94.7 | — | — | — | — | — | — | |
| VGAE2019.08 | 94.4 | 94.7 | — | — | — | — | — | — | |
| VGAE2019.10 | 94.4 | 94.7 | — | — | — | — | — | — | |
| VGAENode Embeddings=None2022.10 | 94.4 | 94.7 | — | — | — | — | — | — | |
| SGC2021.12 | 94.1 | — | — | — | — | — | — | — | |
| EPAGCLMethod category=Standard GCL2024.10 | 94 | 93.5 | — | — | — | — | — | — | |
| SURGERYMerging Partner=Arxiv-NC2026.06 | 93.67 | — | — | — | — | — | — | — | |
| GAT2026.02 | 93.56 | 92.14 | — | — | — | — | — | — | |
| KGNN2026.06 | 93.56 | — | — | — | — | — | — | 85.59 | |
| SURGERYMerging Partner=WikiCS-NC2026.06 | 92.71 | — | — | — | — | — | — | — | |
| (s)VGAEenhancement=neighborhood enlargement2019.05 | 92.7 | — | — | — | — | — | — | — | |
| MPNN-GAT2026.06 | 92.61 | — | — | — | — | — | — | 86.26 | |
| NodeImport-GCN2026.06 | 92.42 | — | — | — | — | — | — | 86.03 | |
| VGAE2019.05 | 92.3 | — | — | — | — | — | — | — | |
| GRACEMethod category=Standard GCL2024.10 | 92.3 | 91.9 | — | — | — | — | — | — | |
| NodeImport-GAT2026.06 | 91.98 | — | — | — | — | — | — | 85.66 | |
| PERMUTEMerging Partner=Arxiv-NC2026.06 | 91.78 | — | — | — | — | — | — | — | |
| ZIPIT!Merging Partner=Arxiv-NC2026.06 | 91.5 | — | — | — | — | — | — | — | |
| RandomMerging Partner=WikiCS-NC2026.06 | 91.5 | — | — | — | — | — | — | — | |
| WAVG.Merging Partner=Arxiv-NC2026.06 | 91.32 | — | — | — | — | — | — | — | |
| GAT2021.12 | 91.2 | — | — | — | — | — | — | — | |
| DGIMethod category=Standard GCL2024.10 | 91.2 | 90.8 | — | — | — | — | — | — | |
| GCN2021.12 | 91.1 | — | — | — | — | — | — | — | |
| RandomMerging Partner=Arxiv-NC2026.06 | 90.22 | — | — | — | — | — | — | — | |
| PERMUTEMerging Partner=WikiCS-NC2026.06 | 90.07 | — | — | — | — | — | — | — | |
| ZIPIT!Merging Partner=WikiCS-NC2026.06 | 89.45 | — | — | — | — | — | — | — | |
| WAVG.Merging Partner=WikiCS-NC2026.06 | 88.7 | — | — | — | — | — | — | — | |
| FSD-CAPMissing Rate (mr)=0.995, Missing Type=Uniform2026.01 | 88.5 | 85.6 | — | — | — | — | — | — | |
| FSD-CAPMissing Rate (mr)=0.995, Missing Type=Structural2026.01 | 88.39 | 85.54 | — | — | — | — | — | — |