Linear Probing on HBC
89.9Balanced AccuracySTAMP_F
Evaluation results
| Method | Links | ||
|---|---|---|---|
| STAMP_FVision (V)=true, Language (L)=false, Gene (G)=true, Modality=Fused (concat)2026.02 | 89.9 | 92 | |
| STAMP_VVision (V)=true, Language (L)=false, Gene (G)=true, Modality=Aligned Vision Encoder2026.02 | 87.2 | 89.5 | |
| mSTARVision (V)=true, Language (L)=true, Gene (G)=true2026.02 | 86.9 | 87.2 | |
| UNIVision (V)=true, Language (L)=false, Gene (G)=false2026.02 | 85.9 | 88.5 | |
| Virchow2Vision (V)=true, Language (L)=false, Gene (G)=false2026.02 | 85.5 | 88.2 | |
| GPFMVision (V)=true, Language (L)=false, Gene (G)=false2026.02 | 83.4 | 87 | |
| UNI2Vision (V)=true, Language (L)=false, Gene (G)=false2026.02 | 83.4 | 86.8 | |
| GigaPathVision (V)=true, Language (L)=false, Gene (G)=false2026.02 | 83.3 | 86.7 | |
| Hop+scSVision (V)=true, Language (L)=false, Gene (G)=true, Components=Hoptimus0 + scGPT-Spatial2026.02 | 82.5 | 86.9 | |
| Hoptimus0Vision (V)=true, Language (L)=false, Gene (G)=false2026.02 | 81.6 | 86.3 | |
| CONCH‡Vision (V)=true, Language (L)=false, Gene (G)=true, Alignment=Vision-Gene2026.02 | 81.1 | 86.5 | |
| PLIP‡Vision (V)=true, Language (L)=false, Gene (G)=true, Alignment=Vision-Gene2026.02 | 80.6 | 85 | |
| CHIEFVision (V)=true, Language (L)=false, Gene (G)=false2026.02 | 75.1 | 81.3 | |
| OmiCLIPVision (V)=true, Language (L)=true, Gene (G)=true2026.02 | 73.8 | 79.2 | |
| PLIPVision (V)=true, Language (L)=true, Gene (G)=false2026.02 | 73.3 | 78.8 | |
| CONCHVision (V)=true, Language (L)=true, Gene (G)=false2026.02 | 70.4 | 76.4 | |
| STAMP_GVision (V)=true, Language (L)=false, Gene (G)=true, Modality=Aligned Gene Encoder2026.02 | 65.9 | 74.5 | |
| CLIPVision (V)=true, Language (L)=true, Gene (G)=false2026.02 | 62.5 | 69.2 | |
| scGPT-SpatialVision (V)=false, Language (L)=false, Gene (G)=true2026.02 | 61 | 70.9 | |
| STAMP_G†Vision (V)=false, Language (L)=false, Gene (G)=true, Pretraining=SpaVis-6M only2026.02 | 58.8 | 67.5 | |
| scGPTVision (V)=false, Language (L)=false, Gene (G)=true2026.02 | 54.7 | 61.7 | |
| NicheformerVision (V)=false, Language (L)=false, Gene (G)=true2026.02 | 48.1 | 60.5 |