Lineage Classification on SARS-CoV-2 sequences (test)
86.4AccuracyLR
Evaluation results
| Method | Links | ||||||
|---|---|---|---|---|---|---|---|
| LREmbedding=Murmur2vec (6% collision), Train Time (sec.)=14.0342025.12 | 86.4 | 85.9 | 86.4 | 85.4 | 69.2 | 84.5 | |
| LREmbedding=Spike2Vec [2], Train Time (sec.)=64.0272025.12 | 85.9 | 85.2 | 85.9 | 84.4 | 69 | 84.2 | |
| SVMEmbedding=Murmur2vec (6% collision), Train Time (sec.)=3.9142025.12 | 85.9 | 85.7 | 85.9 | 85.1 | 69.6 | 84.6 | |
| RFEmbedding=Spike2Vec [2], Train Time (sec.)=21.1412025.12 | 85.6 | 85.4 | 85.6 | 84.4 | 68.3 | 83.9 | |
| SVMEmbedding=Spike2Vec [2], Train Time (sec.)=61.1122025.12 | 85.5 | 85.3 | 85.5 | 84.3 | 68.9 | 84.3 | |
| LREmbedding=Spaced k-mers [23], Train Time (sec.)=200.4772025.12 | 85.5 | 84.8 | 85.5 | 84 | 68.2 | 84 | |
| DTEmbedding=Spaced k-mers [23], Train Time (sec.)=98.0892025.12 | 85.3 | 85 | 85.3 | 84.1 | 68.5 | 84.2 | |
| SVMEmbedding=Spaced k-mers [23], Train Time (sec.)=2218.3472025.12 | 85.2 | 84.1 | 85.2 | 83.6 | 67.8 | 84 | |
| RFEmbedding=Spaced k-mers [23], Train Time (sec.)=646.5572025.12 | 85.1 | 84.2 | 85.1 | 83.4 | 66.5 | 83.3 | |
| DTEmbedding=Spike2Vec [2], Train Time (sec.)=4.2862025.12 | 84.9 | 84.9 | 84.9 | 83.9 | 67.7 | 83.7 | |
| RFEmbedding=String Kernel [3], Train Time (sec.)=1.4642025.12 | 84.7 | 84.4 | 84.1 | 83.5 | 66.6 | 82.4 | |
| SVMEmbedding=String Kernel [3], Train Time (sec.)=7.352025.12 | 84.5 | 83.3 | 84.6 | 82.1 | 63.1 | 81.2 | |
| LREmbedding=String Kernel [3], Train Time (sec.)=1.8692025.12 | 84.5 | 84.3 | 84.3 | 82.6 | 62.8 | 81.2 | |
| RFEmbedding=Murmur2vec (6% collision), Train Time (sec.)=3.6452025.12 | 84.1 | 83.5 | 84.1 | 81.8 | 65.1 | 81.1 | |
| MLPEmbedding=String Kernel [3], Train Time (sec.)=12.6522025.12 | 83.1 | 82.9 | 83.8 | 82.3 | 62.4 | 81.8 | |
| DTEmbedding=Murmur2vec (6% collision), Train Time (sec.)=1.2622025.12 | 83 | 83.2 | 83 | 82.6 | 62.1 | 81.6 | |
| KNNEmbedding=String Kernel [3], Train Time (sec.)=0.3262025.12 | 82.9 | 82.2 | 82.7 | 82.7 | 62.3 | 79.1 | |
| RFEmbedding=PWM2Vec [5], Train Time (sec.)=8.292025.12 | 82.4 | 84.3 | 82.4 | 81.3 | 61.6 | 80.3 | |
| KNNEmbedding=Murmur2vec (6% collision), Train Time (sec.)=0.4892025.12 | 82.4 | 81.9 | 82.4 | 81.5 | 60.7 | 79.3 | |
| LREmbedding=PWM2Vec [5], Train Time (sec.)=471.6592025.12 | 82.2 | 81.3 | 82.2 | 81.1 | 60.5 | 80.2 | |
| DTEmbedding=String Kernel [3], Train Time (sec.)=0.2432025.12 | 82.2 | 82.9 | 82.4 | 82.9 | 63.1 | 82.6 | |
| KNNEmbedding=Spaced k-mers [23], Train Time (sec.)=55.142025.12 | 82.1 | 81 | 82.1 | 80.5 | 59.1 | 78.8 | |
| SVMEmbedding=PWM2Vec [5], Train Time (sec.)=22.712025.12 | 81.8 | 82 | 81.8 | 81 | 60.6 | 80.7 | |
| RFEmbedding=AutoEncoder [26], Train Time (sec.)=46.5832025.12 | 81.4 | 80.3 | 81.4 | 80.2 | 59.3 | 79.3 | |
| KNNEmbedding=Spike2Vec [2], Train Time (sec.)=15.972025.12 | 81.2 | 81.5 | 81.2 | 80.5 | 60.8 | 79.4 | |
| MLPEmbedding=PWM2Vec [5], Train Time (sec.)=35.1972025.12 | 81.2 | 79.2 | 81.2 | 79.4 | 53 | 77 | |
| MLPEmbedding=Spaced k-mers [23], Train Time (sec.)=2072.0292025.12 | 80.9 | 81 | 80.9 | 80.2 | 60.8 | 81.2 | |
| MLPEmbedding=Spike2Vec [2], Train Time (sec.)=127.0662025.12 | 80.3 | 80.3 | 80.3 | 79.7 | 59.6 | 79.7 | |
| DTEmbedding=PWM2Vec [5], Train Time (sec.)=4.12025.12 | 80.3 | 80 | 80.3 | 79.5 | 58.1 | 79.1 | |
| DTEmbedding=AutoEncoder [26], Train Time (sec.)=102.1852025.12 | 80.3 | 79.2 | 80.3 | 79.2 | 54.6 | 77.9 | |
| KNNEmbedding=WDGRL [22], Train Time (sec.)=0.0942025.12 | 80 | 79.9 | 80 | 79.2 | 54.6 | 76.6 | |
| MLPEmbedding=WDGRL [22], Train Time (sec.)=7.3482025.12 | 79.9 | 77.9 | 79.9 | 78.4 | 50.5 | 75.5 | |
| RFEmbedding=WDGRL [22], Train Time (sec.)=0.3932025.12 | 79.6 | 79.3 | 79.6 | 78.9 | 56 | 77.6 | |
| SVMEmbedding=SeqVec [13], Train Time (sec.)=1.12025.12 | 79.6 | 76.8 | 79.6 | 77 | 47.9 | 74.7 | |
| MLPEmbedding=SeqVec [13], Train Time (sec.)=13.1722025.12 | 79.6 | 77.1 | 79.6 | 77.1 | 51 | 76.2 | |
| RFEmbedding=SeqVec [13], Train Time (sec.)=1.8242025.12 | 79.3 | 78.8 | 79.3 | 78.6 | 55.7 | 76.9 | |
| SVMEmbedding=WDGRL [22], Train Time (sec.)=0.3352025.12 | 79.2 | 76.9 | 79.2 | 77.2 | 45.5 | 73.6 | |
| DTEmbedding=WDGRL [22], Train Time (sec.)=0.0092025.12 | 79 | 79.9 | 79 | 78.8 | 55.7 | 76.8 | |
| KNNEmbedding=SeqVec [13], Train Time (sec.)=0.6462025.12 | 79 | 78.7 | 79 | 78.6 | 56.1 | 76.8 | |
| LREmbedding=SeqVec [13], Train Time (sec.)=1.7542025.12 | 78.5 | 76.3 | 78.5 | 76.1 | 45.9 | 74 | |
| KNNEmbedding=AutoEncoder [26], Train Time (sec.)=24.562025.12 | 78.2 | 79.1 | 78.2 | 77.6 | 53.5 | 76.1 | |
| KNNEmbedding=PWM2Vec [5], Train Time (sec.)=1.0332025.12 | 76.7 | 79 | 76.7 | 76 | 56.5 | 77.3 | |
| LREmbedding=AutoEncoder [26], Train Time (sec.)=11769.022025.12 | 76.1 | 75.5 | 76.1 | 73.5 | 40.8 | 70.5 | |
| DTEmbedding=SeqVec [13], Train Time (sec.)=0.1312025.12 | 75.7 | 75.6 | 75.7 | 75.5 | 52.1 | 76 | |
| NBEmbedding=String Kernel [3], Train Time (sec.)=0.1782025.12 | 75.3 | 82.1 | 75.5 | 77.4 | 60.2 | 82.5 | |
| LREmbedding=WDGRL [22], Train Time (sec.)=0.0912025.12 | 75.2 | 69.3 | 75.2 | 71.6 | 26.2 | 64.8 | |
| MLPEmbedding=Murmur2vec (6% collision), Train Time (sec.)=9.282025.12 | 75.1 | 74.5 | 75.1 | 74.3 | 54.2 | 76.7 | |
| NBEmbedding=WDGRL [22], Train Time (sec.)=0.0182025.12 | 72.4 | 75.5 | 72.4 | 72.6 | 43.4 | 72.7 | |
| SVMEmbedding=AutoEncoder [26], Train Time (sec.)=4018.0282025.12 | 69.9 | 72 | 69.9 | 67.8 | 24.3 | 62.7 | |
| NBEmbedding=SeqVec [13], Train Time (sec.)=0.0152025.12 | 68.6 | 70.3 | 68.6 | 68.6 | 35.1 | 69.4 | |
| MLPEmbedding=AutoEncoder [26], Train Time (sec.)=87.4912025.12 | 66.3 | 63.3 | 66.3 | 63.2 | 16.1 | 58.9 | |
| NBEmbedding=Spaced k-mers [23], Train Time (sec.)=267.2432025.12 | 65.5 | 74.2 | 65.5 | 65.8 | 48.1 | 74.9 | |
| NBEmbedding=PWM2Vec [5], Train Time (sec.)=1.4562025.12 | 61 | 66.7 | 61 | 60.7 | 21.8 | 63.1 | |
| NBEmbedding=AutoEncoder [26], Train Time (sec.)=24.6372025.12 | 49 | 53.3 | 49 | 48.1 | 12.3 | 62 | |
| NBEmbedding=Spike2Vec [2], Train Time (sec.)=13.2922025.12 | 47.6 | 71.6 | 47.6 | 53.5 | 45.9 | 72.6 | |
| NBEmbedding=Murmur2vec (6% collision), Train Time (sec.)=0.2912025.12 | 29.4 | 72.9 | 29.4 | 38.2 | 42.1 | 70.9 |