Goal-directed Molecule Design on GuacaMol
1Osimertinib MPO ScoreGEGL
Evaluation Results
| Method | Links | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GEGL2023.12 | 1 | 1 | 0.552 | 1 | 1 | 1 | 1 | 1 | 1 | 0.455 | 0.437 | 1 | 0.933 | 0.833 | 0.905 | 0.749 | 0.763 | 1 | 1 | 1 | 17.627 | — | — | — | — | |
| MolRL-MGPTnumber of GPT agents=4, batch size=256, tasks iterations=50002023.12 | 0.977 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0.939 | 0.449 | 0.422 | 1 | 0.939 | 0.81 | 0.906 | 0.823 | 0.79 | 0.997 | 1 | 1 | 18.052 | — | — | — | — | |
| Graph GA2023.12 | 0.953 | 1 | 1 | 1 | 1 | 1 | 1 | 0.971 | 0.982 | 0.406 | 0.432 | 0.998 | 0.92 | 0.792 | 0.894 | 0.891 | 0.754 | 0.99 | 1 | 1 | 17.983 | — | — | — | — | |
| PABLOEvaluation Budget=10K, Number of runs=52026.01 | 0.919 | — | — | — | — | — | — | — | — | 0.398 | 0.339 | 0.934 | 0.893 | — | 0.853 | 0.773 | 0.606 | 0.951 | — | — | 7.439 | 0.772 | 1 | — | — | |
| REINVENTEvaluation Budget=10K, Number of runs=52026.01 | 0.909 | — | — | — | — | — | — | — | — | 0.399 | 0.332 | 0.91 | 0.865 | — | 0.735 | 0.08 | 0.478 | 0.197 | — | — | 5.549 | 0.644 | 3 | — | — | |
| SMILES LSTM2023.12 | 0.907 | 1 | 1 | 1 | 1 | 1 | 1 | 0.993 | 0.879 | 0.438 | 0.422 | 0.959 | 0.855 | 0.808 | 0.894 | 0.545 | 0.669 | 0.978 | 0.996 | 0.998 | 17.34 | — | — | — | — | |
| Reinvent2023.12 | 0.889 | 1 | 1 | 1 | 1 | 1 | 1 | 0.999 | 0.877 | 0.434 | 0.395 | 1 | 0.895 | 0.764 | 0.888 | 0.539 | 0.59 | 0.095 | 0.994 | 0.99 | 16.35 | — | — | — | — | |
| SMILES GA2023.12 | 0.886 | 0.732 | 0.515 | 0.598 | 0.834 | 0.907 | 0.79 | 0.829 | 0.889 | 0.334 | 0.38 | 0.931 | 0.881 | 0.661 | 0.722 | 0.689 | 0.413 | 0.552 | 0.97 | 0.885 | 14.396 | — | — | — | — | |
| Graph GAEvaluation Budget=10K, Number of runs=52026.01 | 0.88 | — | — | — | — | — | — | — | — | 0.35 | 0.324 | 0.845 | 0.81 | — | 0.783 | 0.689 | 0.421 | 0 | — | — | 5.727 | 0.625 | 2 | — | — | |
| dataset2023.12 | 0.839 | 0.505 | 0.419 | 0.456 | 0.595 | 0.719 | 0.629 | 0.684 | 0.747 | 0.334 | 0.351 | 0.817 | 0.792 | 0.575 | 0.696 | 0.509 | 0.547 | 0.259 | 0.933 | 0.738 | 12.144 | — | — | — | — | |
| DST2026.01 | 0.827 | 0.281 | 0.201 | — | — | — | — | — | — | — | — | 0.778 | 0.752 | — | 0.582 | 0.205 | 0.344 | 0 | — | — | 4.472 | 0.502 | 13 | — | — | |
| MIMOSA2026.01 | 0.817 | 0.296 | 0.238 | — | — | — | — | — | — | — | — | 0.743 | 0.773 | — | 0.594 | 0.209 | 0.287 | 0 | — | — | 4.514 | 0.557 | 12 | — | — | |
| MolPAL2026.01 | 0.816 | 0.309 | 0.273 | — | — | — | — | — | — | — | — | 0.709 | 0.556 | — | 0.651 | 0.117 | 0.286 | 0 | — | — | 4.221 | 0.504 | 16 | — | — | |
| GFlowNet-AL2026.01 | 0.812 | — | — | — | — | — | — | — | — | — | — | 0.732 | 0.705 | — | 0.466 | 0.028 | 0.048 | — | — | — | 3.675 | 0.464 | 24 | 0.229 | 0.191 | |
| MARS2026.01 | 0.809 | 0.233 | 0.203 | — | — | — | — | — | — | — | — | 0.755 | 0.776 | — | 0.546 | 0.083 | 0.296 | 0 | — | — | 4.189 | 0.488 | 17 | — | — | |
| VAE BOrepresentation=SELFIES2026.01 | 0.802 | 0.231 | 0.206 | — | — | — | — | — | — | — | — | 0.707 | 0.564 | — | 0.593 | 0.244 | 0.379 | 0.064 | — | — | 4.272 | 0.482 | 15 | — | — | |
| Screening2026.01 | 0.801 | 0.271 | 0.244 | — | — | — | — | — | — | — | — | 0.706 | 0.532 | — | 0.613 | 0.142 | 0.28 | 0 | — | — | 4.089 | 0.5 | 18 | — | — | |
| VAE BOrepresentation=SMILES2026.01 | 0.801 | 0.267 | 0.222 | — | — | — | — | — | — | — | — | 0.719 | 0.598 | — | 0.611 | 0.114 | 0.139 | 0.064 | — | — | 4.019 | 0.484 | 19 | — | — | |
| GFlowNet2023.12 | 0.792 | 0.409 | 0.211 | 0.342 | 0.586 | 0.458 | 0.396 | 0.535 | 0.224 | 0.218 | 0.195 | 0.715 | 0.68 | 0.459 | 0.43 | 0.042 | 0.072 | 0 | 0.587 | 0.475 | 7.826 | — | — | — | — | |
| Graph MCTS2023.12 | 0.784 | 0.355 | 0.311 | 0.311 | 0.38 | 0.749 | 0.402 | 0.41 | 0.631 | 0.225 | 0.17 | 0.695 | 0.616 | 0.385 | 0.533 | 0.458 | 0.488 | 0.04 | 0.59 | 0.478 | 9.009 | — | — | — | — | |
| GA+D2026.01 | 0.784 | 0.219 | 0.161 | — | — | — | — | — | — | — | — | 0.737 | 0.775 | — | 0.527 | 0.482 | 0.359 | 0 | — | — | 4.381 | 0.337 | 14 | — | — | |
| Graph MCTS2026.01 | 0.738 | — | — | — | — | — | — | — | — | — | — | 0.611 | 0.369 | — | 0.483 | 0.21 | 0.166 | — | — | — | 3.301 | 0.334 | 25 | 0.242 | 0.148 | |
| MolDQN2026.01 | 0.699 | — | — | — | — | — | — | — | — | — | — | 0.532 | 0.171 | — | 0.383 | 0.015 | 0.042 | — | — | — | 2.42 | 0.282 | 26 | 0.188 | 0.108 |