Gene perturbation prediction on Adamson, Dixit, and Norman (test)
0.622Adamson PerformancescGPT + GRN (GRNFormer)
Evaluation Results
| Method | Links | ||||
|---|---|---|---|---|---|
| scGPT + GRN (GRNFormer)Backbone=scGPT, GRN Enhancement=true, Fine-tuning Strategy=full parameter updates, Pre-training Protocol=SEA-AD multiome data2025.03 | 0.622 | 0.138 | 0.418 | — | |
| scGPTBackbone=scGPT, GRN Enhancement=false, Fine-tuning Strategy=full parameter updates, Pre-training Protocol=SEA-AD multiome data2025.03 | 0.609 | 0.13 | 0.405 | — | |
| scFoundation + GRN (GRNFormer)Backbone=scFoundation, GRN Enhancement=true, Fine-tuning Strategy=parameter freezing, Pre-training Protocol=continued pretraining from public checkpoint2025.03 | 0.487 | 0.241 | 0.283 | — | |
| scFoundationBackbone=scFoundation, GRN Enhancement=false, Fine-tuning Strategy=parameter freezing, Pre-training Protocol=continued pretraining from public checkpoint2025.03 | 0.483 | 0.239 | 0.255 | — |