Entity Extraction on Paediatric renal biopsy reports (test)
387Cortex PresentspaCy
Evaluation results
| Method | Links | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| spaCy2026.04 | 387 | 389 | 217 | 360 | 275 | 206 | 255 | 339 | 248 | 2,676 | 74.3 | 0.02 | |
| Gemma2configuration=best-performing2026.04 | 384 | 325 | 379 | 329 | 350 | 299 | 318 | 295 | 354 | 3,033 | 84.3 | 36.6 | |
| BioBERTfine-tuning_data=BioBERT-SQuAD2026.04 | 384 | 332 | 345 | 160 | 145 | 207 | 258 | 168 | 242 | 2,241 | 62.3 | 10.86 | |
| Llama3.2configuration=best-performing2026.04 | 383 | 341 | 389 | 299 | 349 | 291 | 292 | 294 | 365 | 3,003 | 83.4 | 32.5 | |
| RoBERTafine-tuning_data=RoBERTa-SQuAD2026.04 | 383 | 271 | 295 | 253 | 282 | 209 | 237 | 143 | 77 | 2,150 | 59.7 | 3.7 | |
| Phi3.5quantization=Q82026.04 | 378 | 334 | 378 | 357 | 369 | 280 | 219 | 285 | 363 | 2,963 | 82.3 | 57.3 | |
| Phi3.5quantization=Q42026.04 | 375 | 303 | 377 | 336 | 357 | 295 | 208 | 326 | 367 | 2,944 | 81.8 | 44.1 | |
| Qwen1.5configuration=best-performing2026.04 | 364 | 300 | 385 | 339 | 301 | 244 | 200 | 274 | 368 | 2,775 | 77.1 | 27.4 | |
| GLiNER2026.04 | 221 | 346 | 342 | 340 | 256 | 210 | 181 | 249 | 23 | 2,168 | 60.2 | 1.53 | |
| NuExtracttest_sample_size=20/400 reports2026.04 | 17 | 18 | 19 | 17 | 18 | 14 | 15 | 13 | 18 | 149 | 82.8 | 1,473 |