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Differential expression on PerturbQA K562 (AUROC)

0.7AUROCSYNTHPERT
0.51280.56140.610.6586Sep 29, 2025

Evaluation results

MethodLinks
SYNTHPERTBackbone=DeepSeek-R1 distilled Llama 3.1 8B2025.090.7
SUMMER2025.090.6
LLM + SFT ON DATABackbone=DeepSeek-R1 distilled Llama 3.1 8B2025.090.59
GENEPT-GENE2025.090.57
GENEPT-PROT2025.090.57
GAT2025.090.55
GEARS2025.090.54
PHYSICAL2025.090.53
scGPT2025.090.52