Contact Prediction on CAMEO-PTA25 L ≥ 75, N=29 2022-09 cutoff
46.3Precision @ L/2 (long)top-K attention fusion
Evaluation Results
| Method | Links | ||
|---|---|---|---|
| top-K attention fusionArchitecture=ESM-2-3B, K=10, fusion_mode=naive-mean2026.06 | 46.3 | 0.094 | |
| top-K attention fusionArchitecture=ESM-2-650M, K=10, fusion_mode=naive-mean2026.06 | 45.9 | 0.09 | |
| top-K attention fusionArchitecture=ProtT5-XL, K=10, fusion_mode=naive-mean2026.06 | 41.8 | 0.059 | |
| top-1 headArchitecture=ESM-2-650M, K=102026.06 | 39.6 | — | |
| Co-evolutionary Jacobian (CJ)Architecture=ESM-2-650M, K=10, readout_type=logit2026.06 | 36.9 | — | |
| Co-evolutionary Jacobian (CJ)Architecture=ESM-2-3B, K=10, readout_type=logit2026.06 | 36.9 | — | |
| Co-evolutionary Jacobian (CJ)Architecture=ProtT5-XL, K=10, readout_type=repr2026.06 | 35.9 | — | |
| top-1 headArchitecture=ProtT5-XL, K=102026.06 | 35.4 | — | |
| top-K attention fusionArchitecture=ESM-1b, K=10, fusion_mode=naive-mean2026.06 | 34.8 | 0.059 | |
| top-1 headArchitecture=ESM-2-3B, K=102026.06 | 34.7 | — | |
| top-1 headArchitecture=ESM-1b, K=102026.06 | 34 | — | |
| Co-evolutionary Jacobian (CJ)Architecture=ESM-1b, K=10, readout_type=logit2026.06 | 28.9 | — | |
| top-K attention fusionArchitecture=AMPLIFY-350M†, K=10, leakage_cleanliness=partial, fusion_mode=naive-mean2026.06 | 26.2 | — | |
| top-1 headArchitecture=AMPLIFY-350M†, K=10, leakage_cleanliness=partial2026.06 | 25.5 | — |