Classification on Genomic Benchmarks
96.3Coding vs Intergenomic ClassificationGenerator
Evaluation results
| Method | Links | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| GeneratorNumber of Parameters=1.2B2026.06 | 96.3 | — | 98 | 76.3 | 91.7 | 92.8 | 82.3 | 95.8 | 82.1 | 87.1 | |
| Generator-AllNumber of Parameters=1.2B2026.06 | 95.9 | — | 97.8 | 75.4 | 91.2 | 92.6 | 81.2 | 95.5 | 76.8 | 78.4 | |
| LDARNetNumber of Parameters=120M2026.06 | 95.5 | — | 97.6 | 75.2 | 90.6 | 94.1 | 79.8 | 96.3 | 81 | 78.2 | |
| NT-v2Number of Parameters=500M2026.06 | 95.5 | — | 97.6 | 75.6 | 92.1 | 94.1 | 81.3 | 93.2 | 79.7 | 85.5 | |
| DNABERT-2Number of Parameters=117M2026.06 | 95.1 | — | 97.7 | 75.8 | 91.8 | 87.4 | 80.6 | 95.7 | 77.4 | 86.5 | |
| Caduceus-PSNumber of Parameters=8M2026.06 | 94.4 | — | 97.6 | 74.9 | 92.3 | 94.1 | 82.6 | 96.1 | 81.6 | 82.6 | |
| Caduceus-PhNumber of Parameters=8M2026.06 | 93.3 | — | 97.5 | 74.7 | 92.4 | 93.8 | 82.5 | 96.1 | 82.7 | 78.8 | |
| GROVERNumber of Parameters=87M2026.06 | 91.9 | — | 96.6 | 73.8 | 91.1 | 89.7 | 78.9 | 95 | 76.1 | 74.2 | |
| CaduceusFine-Tuning Objective=MLM, Parameter Count=467K2024.06 | 91.3 | 81 | 97 | 73.7 | 90.7 | 87.4 | 82.1 | 93.5 | — | — | |
| CaduceusFine-Tuning Objective=SEDD, Parameter Count=467k2024.06 | 91.3 | 78.4 | 97 | 74.6 | 90.5 | 82.8 | 81.6 | 93.5 | — | — | |
| Caduceus (MDLM)Fine-Tuning Objective=MDLM (ours), Parameter Count=467k2024.06 | 91.3 | 79.5 | 97 | 74.3 | 89.9 | 86.8 | 82.3 | 94 | — | — | |
| CaduceusFine-Tuning Objective=Plaid, Parameter Count=507k2024.06 | 90.8 | 74.5 | 97.1 | 74.3 | 88.5 | 86.8 | 82 | 93.5 | — | — | |
| HyenaDNANumber of Parameters=55M2026.06 | 90.2 | — | 95.8 | 72.5 | 90.1 | 93.2 | 77.4 | 89.4 | 77 | 75.6 | |
| MambaFine-Tuning Objective=AR, Parameter Count=465K2024.06 | 89.7 | 76.3 | 96.7 | 73.4 | 85.6 | 86.1 | 80.6 | 92.6 | — | — |