Causal Discovery on Sachs real-world data protein signaling network
11SHDCaPS
Evaluation results
| Method | Links | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CaPSVariation=Full2024.10 | 11 | 42 | 50 | — | — | — | — | — | — | — | — | — | — | |
| PCmode=deterministic, seeds=single result2026.06 | 11 | — | 38.7 | 42.9 | — | — | — | — | — | — | — | — | 35.3 | |
| GESmode=deterministic, seeds=single result2026.06 | 11 | — | 38.7 | 42.9 | — | — | — | — | — | — | — | — | 35.3 | |
| EML-CDseeds=52026.06 | 11.2 | — | 49.2 | 75.6 | — | — | — | — | — | — | — | — | 36.5 | |
| NOTEARS2024.10 | 12 | 46 | 38.7 | — | — | — | — | — | — | — | — | — | — | |
| CAM2024.10 | 12 | 55 | 44.4 | — | — | — | — | — | — | — | — | — | — | |
| SCORE2024.10 | 12 | 45 | 44.4 | — | — | — | — | — | — | — | — | — | — | |
| CaPSVariation=w/o Parent Score2024.10 | 12 | 45 | 44.4 | — | — | — | — | — | — | — | — | — | — | |
| SNOE-CVModel Selection=Cross-Validation2025.06 | 12 | — | 52 | — | — | — | — | 10 | 7 | 2 | 9 | 1 | — | |
| CAM (spline)mode=deterministic, seeds=single result2026.06 | 12 | — | 48.3 | 58.3 | — | — | — | — | — | — | — | — | 41.2 | |
| NOTEARSmode=deterministic, seeds=single result2026.06 | 12 | — | 38.7 | 42.9 | — | — | — | — | — | — | — | — | 35.3 | |
| DiffAN2024.10 | 12.2 | 46.2 | 43.4 | — | — | — | — | — | — | — | — | — | — | |
| NOTEARSpreprocessing=best of original/standardized data2025.06 | 13 | — | 40 | — | — | — | — | 8 | 5 | 1 | 10 | 2 | — | |
| SNOE-SSModel Selection=Sample-Splitting2025.06 | 13 | — | 50 | — | — | — | — | 11 | 7 | 3 | 9 | 1 | — | |
| DAGMAmode=deterministic, seeds=single result2026.06 | 13 | — | 37 | 50 | — | — | — | — | — | — | — | — | 29.4 | |
| GraNDAG2024.10 | 13.2 | 54 | 37.3 | — | — | — | — | — | — | — | — | — | — | |
| DirectLiNGAMmode=deterministic, seeds=single result2026.06 | 14 | — | 27.3 | 60 | — | — | — | — | — | — | — | — | 17.6 | |
| DAGMApreprocessing=best of original/standardized data2025.06 | 15 | — | 26 | — | — | — | — | 6 | 3 | 1 | 12 | 2 | — | |
| GraNDAGmode=deterministic, seeds=single result2026.06 | 15 | — | 20 | 66.7 | — | — | — | — | — | — | — | — | 11.8 | |
| GOLEM2024.10 | 17 | 44 | 42.1 | — | — | — | — | — | — | — | — | — | — | |
| CaPSVariation=w/o Theorem 12024.10 | 17 | 54 | 25.7 | — | — | — | — | — | — | — | — | — | — | |
| MATMCDLLM=GPT-4o mini, Top-K Guess Reasoning=K=12024.12 | 17 | — | 42 | 50 | 6 | 0.14 | — | — | — | — | — | — | — | |
| DAGuerreotype2024.10 | 17.9 | 51.4 | 11.8 | — | — | — | — | — | — | — | — | — | — | |
| EXP [ADAM]λ1=1.002026.01 | 19 | — | — | — | — | — | 1.5101 | — | — | — | — | — | — | |
| AAC [PROX-LS]λ1=0.502026.01 | 19 | — | — | — | — | — | 9.0109 | — | — | — | — | — | — | |
| SPG-AHOCλ1=1.002026.01 | 19 | — | — | — | — | — | 0 | — | — | — | — | — | — | |
| CAM2025.06 | 19 | — | 39 | — | — | — | — | 19 | 7 | 9 | 7 | 3 | — | |
| Efficient-CDLMsLLM=GPT-4o mini2024.12 | 20 | — | 9 | 33 | 2 | 0.16 | — | — | — | — | — | — | — | |
| SCORE2025.06 | 20 | — | 29 | — | — | — | — | 17 | 5 | 8 | 8 | 4 | — | |
| MAC2024.12 | 21 | — | — | — | — | 0.19 | — | — | — | — | — | — | — | |
| MATMCD-RELLM=GPT-4o mini, Top-K Guess Reasoning=K=22024.12 | 21 | — | 31 | 31 | 12 | 0.17 | — | — | — | — | — | — | — | |
| PC2024.12 | 24 | — | 44 | 38 | 15 | 0.19 | — | — | — | — | — | — | — | |
| LLM-KBCILLM=GPT-4o mini2024.12 | 27 | — | 14 | 13 | 19 | 0.22 | — | — | — | — | — | — | — | |
| LLM-KBCI-RELLM=GPT-4o mini, Top-K Guess Reasoning=K=22024.12 | 28 | — | 10 | 9 | 18 | 0.23 | — | — | — | — | — | — | — | |
| DirectLiNGAM2024.12 | 29 | — | 36 | 27 | 25 | 0.23 | — | — | — | — | — | — | — | |
| SCD-LLMLLM=GPT-4o mini2024.12 | 29 | — | 5 | 4 | 19 | 0.23 | — | — | — | — | — | — | — | |
| ReActLLM=GPT-4o mini2024.12 | 29 | — | 4 | 4 | 20 | 0.23 | — | — | — | — | — | — | — | |
| GOLEMmode=deterministic, seeds=single result2026.06 | 29 | — | 14.6 | 12.5 | — | — | — | — | — | — | — | — | 17.6 | |
| LLM-KBCI-RALLM=GPT-4o mini, Framework=ReAct2024.12 | 30 | — | 9 | 8 | 20 | 0.24 | — | — | — | — | — | — | — | |
| Exact Search2024.12 | 31 | — | 23 | 18 | 26 | 0.25 | — | — | — | — | — | — | — | |
| VI-DP-DAG2024.10 | 42.6 | 40 | 34 | — | — | — | — | — | — | — | — | — | — |