Biological Relation Extraction (EP+RT) on BioREDirect
56Micro-F1PubMedBERT
Evaluation results
| Method | Links | ||
|---|---|---|---|
| PubMedBERT2026.06 | 56 | 38 | |
| GPT-3.5Training=fine-tune2026.06 | 50 | — | |
| Qwen3.5-27BTask Formulation=Pairwise Classification, Reasoning=enabled2026.06 | 44 | 41 | |
| gemma-4-31B-itTask Formulation=Pairwise Classification, Reasoning=disabled2026.06 | 43 | 37 | |
| Qwen3.5-35B-A3BTask Formulation=Pairwise Classification, Reasoning=enabled2026.06 | 43 | 40 | |
| gemma-4-31B-itTask Formulation=Pairwise Classification, Reasoning=enabled2026.06 | 42 | 39 | |
| gemma-4-26B-A4B-itTask Formulation=Pairwise Classification, Reasoning=enabled2026.06 | 42 | 40 | |
| gemma-4-31B-itTask Formulation=Joint Generation, Reasoning=enabled2026.06 | 42 | 45 | |
| Qwen3.5-35B-A3BTask Formulation=Joint Generation, Reasoning=enabled2026.06 | 42 | 42 | |
| Qwen3.5-27BTask Formulation=Joint Generation, Reasoning=enabled2026.06 | 41 | 43 | |
| gemma-4-31B-itTask Formulation=Joint Generation, Reasoning=disabled2026.06 | 40 | 39 | |
| gemma-4-26B-A4B-itTask Formulation=Joint Generation, Reasoning=enabled2026.06 | 39 | 45 | |
| gemma-4-26B-A4B-itTask Formulation=Pairwise Classification, Reasoning=disabled2026.06 | 38 | 38 | |
| Qwen3.5-27BTask Formulation=Joint Generation, Reasoning=disabled2026.06 | 37 | 37 | |
| Qwen3.5-27BTask Formulation=Pairwise Classification, Reasoning=disabled2026.06 | 35 | 31 | |
| gemma-4-26B-A4B-itTask Formulation=Joint Generation, Reasoning=disabled2026.06 | 34 | 36 | |
| Qwen3.5-35B-A3BTask Formulation=Joint Generation, Reasoning=disabled2026.06 | 34 | 34 | |
| Deepseek-v3Prompting=few-shot2026.06 | 34 | — | |
| Qwen3.5-35B-A3BTask Formulation=Pairwise Classification, Reasoning=disabled2026.06 | 11 | 16 |