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Binary Protein-Protein Interaction Prediction on Yeast DFS

71.94Micro-F1ESM2-650M+
59.127262.453665.7869.1064May 11, 2026

Evaluation results

MethodLinks
ESM2-650M+L3-PPI framework=integrated2026.0571.94
Saprot+L3-PPI framework=integrated2026.0570.39
GearNet+L3-PPI framework=integrated2026.0569.9
PIPR+L3-PPI framework=integrated2026.0569.18
PIPRL3-PPI framework=excluded2026.0567.17
GNN-PPIL3-PPI framework=excluded2026.0566.78
GNN-PPI+L3-PPI framework=integrated2026.0566.66
ProstT5+L3-PPI framework=integrated2026.0565.96
MLP+L3-PPI framework=integrated2026.0565.72
DPPI+L3-PPI framework=integrated2026.0563.03
DNN-PPI+L3-PPI framework=integrated2026.0562.24
DNN-PPIL3-PPI framework=excluded2026.0561.89
DPPIL3-PPI framework=excluded2026.0561.6
MLPL3-PPI framework=excluded2026.0559.62