Binary Classification on Neuropeptide (NeuroPID)
96.3AUCESM-2
Evaluation results
| Method | Links | ||
|---|---|---|---|
| ESM-2Model parameters=150M, Evaluation protocol=KNN probe2026.05 | 96.3 | — | |
| ProtSentModel parameters=35M, Evaluation protocol=KNN probe2026.05 | 95.6 | 0.9 | |
| ESM-2Model parameters=35M, Evaluation protocol=KNN probe2026.05 | 94.8 | — | |
| ProtSentModel parameters=150M, Evaluation protocol=KNN probe2026.05 | 94.5 | 1.8 | |
| All-pos MLM+JEPABackbone=ESM2-150M2026.05 | 0.985 | — | |
| Masked-pos (SGDm)Backbone=ESM2-35M2026.05 | 0.982 | — | |
| MLM-onlyBackbone=ESM2-150M2026.05 | 0.982 | — | |
| Masked-pos (run 2)Backbone=ESM2-150M2026.05 | 0.982 | — | |
| MLM-onlyBackbone=Rand-Init-35M2026.05 | 0.981 | — | |
| Masked-posBackbone=ProteinBERT2-35M2026.05 | 0.981 | — | |
| BaselineBackbone=ESM2-150M2026.05 | 0.98 | — | |
| BaselineBackbone=AMPLIFY-120M2026.05 | 0.98 | — | |
| Masked-posBackbone=Rand-Init-35M2026.05 | 0.98 | — | |
| Masked-pos (run 1)Backbone=ESM2-150M2026.05 | 0.979 | — | |
| ProteinBERT2-150M masked-posBackbone=Not specified2026.05 | 0.978 | — | |
| MLM-onlyBackbone=AMPLIFY-120M2026.05 | 0.977 | — | |
| All-pos MLM+JEPABackbone=Rand-Init-35M2026.05 | 0.976 | — | |
| BaselineBackbone=ESM2-35M2026.05 | 0.975 | — | |
| MLM-onlyBackbone=ESM2-35M2026.05 | 0.975 | — | |
| Masked-posBackbone=AMPLIFY-120M2026.05 | 0.975 | — | |
| Masked-pos (AdamW)Backbone=ESM2-35M2026.05 | 0.974 | — | |
| EMA (4h)Backbone=ESM2-150M2026.05 | 0.974 | — | |
| All-pos MLM+JEPABackbone=ESM2-35M2026.05 | 0.97 | — | |
| All-pos MLM+JEPABackbone=AMPLIFY-120M2026.05 | 0.961 | — | |
| MLM+JEPA @90kBackbone=Not specified2026.05 | 0.961 | — | |
| JEPA-onlyBackbone=ESM2-35M2026.05 | 0.96 | — | |
| BaselineBackbone=Rand-Init-35M2026.05 | 0.956 | — | |
| ESM2-150M rand-init MLM-onlyBackbone=Not specified2026.05 | 0.951 | — | |
| All-pos MLM+JEPABackbone=ProteinBERT2-35M2026.05 | 0.947 | — | |
| JEPA-onlyBackbone=Rand-Init-35M2026.05 | 0.937 | — | |
| MLM-onlyBackbone=ProteinBERT2-35M2026.05 | 0.934 | — | |
| JEPA-only @90kBackbone=Not specified2026.05 | 0.934 | — | |
| BaselineBackbone=ProteinBERT2-35M2026.05 | 0.933 | — | |
| JEPA-onlyBackbone=ESM2-150M2026.05 | 0.906 | — | |
| JEPA-onlyBackbone=ProteinBERT2-35M2026.05 | 0.889 | — | |
| JEPA-onlyBackbone=AMPLIFY-120M2026.05 | 0.84 | — |