Antibody-antigen docking on Ab-Bench and DB5.5 held-out subset (test)
54.3Success Rate (SR)DockGPT + ground-truth
Evaluation results
| Method | Links | |||||||
|---|---|---|---|---|---|---|---|---|
| DockGPT + ground-truthDocking protocol=Epitope-Guided Docking, Epitope guidance source=ground-truth2026.06 | 54.3 | 1.6 | 3.1 | 6.8 | 4.6 | 9.5 | 20.6 | |
| DockGPT + SurfBindDocking protocol=Epitope-Guided Docking, Epitope guidance source=SurfBind-predicted2026.06 | 38 | 2.1 | 7.3 | 9.7 | 6.4 | 14.9 | 22.6 | |
| AF-MultimerDocking protocol=Blind Docking2026.06 | 28.3 | 1.9 | 9.3 | 14.7 | 12.2 | 22.6 | 36 | |
| DockGPTDocking protocol=Blind Docking2026.06 | 26.1 | 2.5 | 9.2 | 12.1 | 8.2 | 19.5 | 25.4 | |
| ZDockDocking protocol=Blind Docking2026.06 | 2.2 | 10.1 | 12.8 | 17 | 23.9 | 28.2 | 39.3 | |
| HDockDocking protocol=Blind Docking2026.06 | 2.2 | 12.5 | 15.6 | 19.8 | 24 | 47.3 | 58.5 | |
| EquiDockDocking protocol=Blind Docking2026.06 | 0 | 11.6 | 13.7 | 16.8 | 31.9 | 41.1 | 51 | |
| PatchDockDocking protocol=Blind Docking2026.06 | 0 | 12 | 13.9 | 15.5 | 26.1 | 32.2 | 46.3 |