Correctness Coverage Evaluation for Medical Multiple-Choice Question Answering Based on the Enhanced Conformal Prediction Framework

Large language models (LLMs) are increasingly adopted in medical question-answering (QA) scenarios. However, LLMs can generate hallucinations and nonfactual information, undermining their trustworthiness in high-stakes medical tasks. Conformal Prediction (CP) provides a statistically rigorous framework for marginal (average) coverage guarantees but has limited exploration in medical QA. This paper proposes an enhanced CP framework for medical multiple-choice question-answering (MCQA) tasks. By associating the non-conformance score with the frequency score of correct options and leveraging self-consistency, the framework addresses internal model opacity and incorporates a risk control strategy with a monotonic loss function. Evaluated on MedMCQA, MedQA, and MMLU datasets using four off-the-shelf LLMs, the proposed method meets specified error rate guarantees while reducing average prediction set size with increased risk level, offering a promising uncertainty evaluation metric for LLMs.

Yusong Ke, Hongru Lin, Yuting Ruan, Junya Tang, Li Li · 2025