Semi-Supervised Segmentation of Functional Tissue Units at the Cellular Level

We present a new method for functional tissue unit segmentation at the cellular level, which utilizes the latest deep learning semantic segmentation approaches together with domain adaptation and semi-supervised learning techniques. This approach allows for minimizing the domain gap, class imbalance, and captures settings influence between HPA and HubMAP datasets. The presented approach achieves comparable with state-of-the-art-result in functional tissue unit segmentation at the cellular level. The source code is available at https://github.com/VSydorskyy/hubmap_2022_htt_solution

Volodymyr Sydorskyi, Igor Krashenyi, Denis Sakva, Oleksandr Zarichkovyi · 2023