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scFates
A scalable Python suite for fast tree inference and advanced pseudotime downstream analysis, with a focus on fate biasing.
What is scFates?
A scalable Python suite for fast tree inference and advanced pseudotime downstream analysis, with a focus on fate biasing. Compatible with anndata object format used in scanpy or scvelo pipelines. Offers two tree inference algorithms: ElPiGraph and Simple PPT.
Product typeScientific Models
Pricing · Open Source
Deployment
APINot available
What teams use scFates for
Tree inference
Pseudotime analysis
Fate biasing
scRNAseq data analysis
Integrations and access
Platforms, integrations, and language support vary by plan and region. Confirm final requirements with the vendor.
Platforms
IntegrationsAPI and webhooks
Languages
Support
What reviewers say
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Enterprise readiness
Compliance claims are normalized from current vendor documentation and independently reviewed by SOTA2.
Data retention:
Benchmarks and comparisons
Independent benchmarksStructured task results are being verified.
Side-by-side comparisonsComparison workspaces will be available in a later release.
