An open-source project hosted on GitHub under the SamStudio8 account, providing a snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads.
An open-source project hosted on GitHub under the SamStudio8 account, providing a snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads.
A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads, designed for whole-genome assembly from metagenomic data.
What customers say
“GitHub Copilot will bring huge benefits to our engineering teams by reducing the amount of time spent on boilerplate code, keeping the teams in their flow state, allowing them to ship high-quality products to market faster.”
“GitHub's endless plug-ins, beautiful UI, and optimized workflows make devs happy. Happy and empowered engineers write the best code, make better decisions, and have more time to innovate.”
Jen Peck Senior Director of Engineering @ RedfinReticulatus customer
“At Uber, we continuously strive to improve our developer experience. We migrated code hosting and review to GitHub and are adopting GitHub Copilot to boost overall developer productivity.”
Ali-Reza Adl-Tabatabai Senior Director of Engineering @ UberReticulatus customer
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Claude Opus 5, the latest model from Anthropic, is now integrated into GitHub Copilot. The model is specifically designed for complex, agentic coding tasks including regression verification and multi-step autonomous code changes, and it features refined cyber-security safeguards. It is available to users of Copilot Pro+, Max, Business, and Enterprise plans across all supported development environments, including Visual Studio Code, JetBrains, and the web.
GitHub Mobile has introduced a feature enabling users to address failed GitHub Actions checks using the Copilot coding agent. When a CI check fails, users can select the 'Fix with Copilot' option, prompting the agent to analyze the failure, implement a potential fix, and open a secondary pull request for review. This functionality aims to streamline CI remediation for developers working on mobile devices.
Company news
GitHub MCP Server Updated for Stateless Specification Support
The GitHub Model Context Protocol (MCP) Server has updated its implementation to support the forthcoming stateless MCP specification, which is scheduled for release on July 28, 2026. This transition removes dependencies on persistent sessions and database-backed state, allowing for improved scalability and faster connectivity. The updated server uses a Go-based SDK and includes enhanced conformance testing to help developers verify agentic behaviors.
New featurePartnership
GitHub Copilot Cloud Agent for Linear Generally Available
The GitHub Copilot cloud agent for Linear is now generally available. This integration allows users to assign issues directly to the Copilot agent, which then autonomously analyzes the issue, executes changes in an ephemeral environment using GitHub Actions, and provides progress updates within the Linear interface. Users may configure model selection and custom agent behavior to align with specific team workflows. The feature is available to Copilot Pro, Pro+, Business, and Enterprise subscribers.
