DeepFlow

Open-source research software project for reconstructing cell cycle and disease progression using deep learning from flow cytometry data. Hosted under the theislab GitHub organization.

About DeepFlow

Open-source research software project for reconstructing cell cycle and disease progression using deep learning from flow cytometry data. Hosted under the theislab GitHub organization.

Products

  • DeepFlow

    Scientific ModelsFree plan

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    Neural network implementation for reconstructing cell cycle and disease progression using deep learning from flow cytometry data.

What customers say

“GitHub Copilot will bring huge benefits to our engineering teams by reducing the amount of time spent on boilerplate code, keeping the teams in their flow state, allowing them to ship high-quality products to market faster.”
Santosh Lolyeker VP, Engineering Fellow @ VeritasDeepFlow customer
“GitHub's endless plug-ins, beautiful UI, and optimized workflows make devs happy. Happy and empowered engineers write the best code, make better decisions, and have more time to innovate.”
Jen Peck Senior Director of Engineering @ RedfinDeepFlow customer

Security and compliance

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DeepFlow hasn't published certifications or security practices that we could find. Ask their team for audit reports.

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Latest updates from DeepFlow

New feature

Claude Opus 5 model added to GitHub Copilot

Anthropic's Claude Opus 5 model is now available within GitHub Copilot. The model is specifically designed for complex, long-running coding tasks that require reasoning, tool use, and multi-step execution. Claude Opus 5 includes enhanced security safeguards and is available to Copilot Pro+, Max, Business, and Enterprise users across various interfaces, including Visual Studio Code, GitHub Mobile, and the Copilot CLI.

PartnerAnthropic
New feature

GitHub Mobile enables fix of failing Actions checks via Copilot

GitHub Mobile now allows users to use the Copilot coding agent to investigate and fix failing GitHub Actions checks directly from their mobile devices. When a check fails on a pull request, users can select the 'Fix with Copilot' option, triggering the agent to analyze the failure, implement a potential fix, and open a new pull request for review. This feature is intended to streamline CI/CD remediation workflows for developers on the go.

New featureCompany news

GitHub MCP Server updated to support upcoming stateless protocol specification

The GitHub MCP Server has been updated to support the upcoming stateless MCP (Model Context Protocol) specification ahead of its July 28, 2026, release. The update removes the need for Redis sessions and reduces latency by eliminating database reads on every request. It also improves logging by utilizing HTTP headers, avoiding the need for deep packet inspection of request payloads. These changes aim to enhance the scalability and performance of MCP-based agentic development workflows.

New featurePartnership

GitHub Copilot cloud agent for Linear gains general availability

GitHub Copilot cloud agent for Linear has reached general availability. Users can now assign Linear issues directly to the Copilot cloud agent, which analyzes the task, opens a draft pull request, and performs autonomous work in an ephemeral GitHub Actions environment. The integration allows users to configure model selection, custom agents, and branch settings directly from their Linear workspace. The feature is available to users with Copilot Pro, Pro+, Business, and Enterprise subscriptions.

IntegrationLinear