Bonito

An open source research basecaller for Oxford Nanopore reads, developed and maintained by Oxford Nanopore Technologies (nanoporetech).

About Bonito

An open source research basecaller for Oxford Nanopore reads, developed and maintained by Oxford Nanopore Technologies (nanoporetech).

Products

  • Bonito

    Scientific Models

    View product

    A PyTorch-based open source research basecaller for Oxford Nanopore reads.

What customers say

“GitHub Copilot will bring huge benefits to our engineering teams by reducing the amount of time spent on boilerplate code, keeping the teams in their flow state, allowing them to ship high-quality products to market faster.”
Santosh Lolyeker VP, Engineering Fellow @ VeritasBonito customer
“GitHub's endless plug-ins, beautiful UI, and optimized workflows make devs happy. Happy and empowered engineers write the best code, make better decisions, and have more time to innovate.”
Jen Peck Senior Director of Engineering @ RedfinBonito customer

Security and compliance

No security details published yet

Bonito hasn't published certifications or security practices that we could find. Ask their team for audit reports.

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Latest updates from Bonito

New feature

Claude Opus 5 Model Available in GitHub Copilot

Anthropic's Claude Opus 5 model is now available within GitHub Copilot. The model is specifically designed for complex, agentic coding workflows, such as autonomous code changes and regression verification. It features enhanced safeguards for high-harm cyber content. The model is accessible to Copilot Pro+, Max, Business, and Enterprise users across various platforms, including Visual Studio Code, GitHub Mobile, and the web, though rollout for these users is gradual.

MentionedAnthropic
New feature

GitHub Mobile Integration for Copilot-Powered CI Fixes

GitHub Mobile now enables users to address CI failures directly from the app using the Copilot coding agent. When a GitHub Actions check fails on a pull request, users can select a 'Fix with Copilot' option. The agent then analyzes the failure, attempts to implement a fix, and opens a new pull request for the user to review and merge. This feature is available in the latest production builds for iOS and Android.

New feature

GitHub MCP Server Updates for Stateless Protocol Support

GitHub MCP Server has been updated to support the upcoming stateless MCP (Model Context Protocol) specification ahead of its July 28, 2026, release. The update removes Redis sessions and streamlines handshake processes, allowing for improved scalability and faster connections. These changes improve overall performance by reducing database read/write intensity and modifying payload inspection methods. The implementation utilizes the official Go SDK and maintains backwards compatibility for current clients.

MentionedGo
New featurePartnership

Copilot Cloud Agent for Linear Generally Available

GitHub has launched the Copilot cloud agent for Linear into general availability. Users can assign Linear issues directly to Copilot, which then analyzes the issue, opens a draft pull request, and provides progress updates within the Linear activity timeline. The integration allows for custom model selection, branch configuration, and steering via comments. The feature is available to users with Copilot Pro, Pro+, Business, and Enterprise subscriptions via the GitHub Marketplace.

PartnerLinear