# TFBS prediction on 165 ChIP-seq Small

Source: [TFBS prediction on 165 ChIP-seq Small](<https://www.sota2.com/research/sota/tfbs-prediction-on-165-chip-seq-small>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-02-26T06:00:25.788Z

Evaluation of model performance on Transcription Factor Binding Site (TFBS) prediction using the 165 ChIP-seq Small dataset, measured by ROC-AUC.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | TFBS prediction |
| Dataset (including any stated split) | 165 ChIP-seq Small |
| Metric | ROC-AUC |
| Unit | PERCENT |
| Direction | Higher is better |
| Results loaded | 7 of 7 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [ROC-AUC](<https://www.sota2.com/research/sota/tfbs-prediction-on-165-chip-seq-small.md?metric=ROC-AUC>): Higher is better; unit: PERCENT.

## Recorded results

| Method | ROC-AUC | Result date | Report paper |
| --- | --- | --- | --- |
| GCBLANE | 90.4237 | Not recorded | 68fa5f751e209131ce9ea17b |
| MSDenseNet | 89.7 | Not recorded | 68fa5f751e209131ce9ea17b |
| MAResNet | 88.3 | Not recorded | 68fa5f751e209131ce9ea17b |
| SAResNet | 87.6 | Not recorded | 68fa5f751e209131ce9ea17b |
| Expectation-Lou | 83.5 | Not recorded | 68fa5f751e209131ce9ea17b |
| HOCNN | 82.1 | Not recorded | 68fa5f751e209131ce9ea17b |
| CNN Zeng | 81.8 | Not recorded | 68fa5f751e209131ce9ea17b |

### GCBLANE

ROC-AUC: 90.4237. Result ID: 698bc9d17a967eddb77159eb.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

[Implementation](<https://github.com/projectultra/GCBLANE>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MSDenseNet

ROC-AUC: 89.7. Result ID: 698bc9d17a967eddb77159ec.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MAResNet

ROC-AUC: 88.3. Result ID: 698bc9d17a967eddb77159ed.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### SAResNet

ROC-AUC: 87.6. Result ID: 698bc9d17a967eddb77159ee.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### Expectation-Lou

ROC-AUC: 83.5. Result ID: 698bc9d17a967eddb77159f0.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### HOCNN

ROC-AUC: 82.1. Result ID: 698bc9d17a967eddb77159ef.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### CNN Zeng

ROC-AUC: 81.8. Result ID: 698bc9d17a967eddb77159f1.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

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