# TFBS prediction on 165 ChIP-seq datasets Large

Source: [TFBS prediction on 165 ChIP-seq datasets Large](<https://www.sota2.com/research/sota/tfbs-prediction-on-165-chip-seq-datasets-large>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-02-26T06:00:20.025Z

Evaluation of Transcription Factor Binding Site (TFBS) prediction models using the 'Large' subset of the 165 ChIP-seq datasets, assessed using ROC-AUC.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | TFBS prediction |
| Dataset (including any stated split) | 165 ChIP-seq datasets Large |
| Metric | ROC AUC |
| Unit | SCALAR |
| Direction | Higher is better |
| Results loaded | 7 of 7 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [ROC AUC](<https://www.sota2.com/research/sota/tfbs-prediction-on-165-chip-seq-datasets-large.md?metric=ROC%20AUC>): Higher is better; unit: SCALAR.

## Recorded results

| Method | ROC AUC | Result date | Report paper |
| --- | --- | --- | --- |
| GCBLANE | 0.9732 | Not recorded | 68fa5f751e209131ce9ea17b |
| MSDenseNet | 0.973 | Not recorded | 68fa5f751e209131ce9ea17b |
| MAResNet | 0.972 | Not recorded | 68fa5f751e209131ce9ea17b |
| SAResNet | 0.966 | Not recorded | 68fa5f751e209131ce9ea17b |
| HOCNN | 0.957 | Not recorded | 68fa5f751e209131ce9ea17b |
| CNN Zeng | 0.953 | Not recorded | 68fa5f751e209131ce9ea17b |
| Expectation-Lou | 0.947 | Not recorded | 68fa5f751e209131ce9ea17b |

### GCBLANE

ROC AUC: 0.9732. Result ID: 698bc9d17a967eddb77159f9.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

[Implementation](<https://github.com/projectultra/GCBLANE>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MSDenseNet

ROC AUC: 0.973. Result ID: 698bc9d17a967eddb77159fa.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MAResNet

ROC AUC: 0.972. Result ID: 698bc9d17a967eddb77159fb.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### SAResNet

ROC AUC: 0.966. Result ID: 698bc9d17a967eddb77159fc.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### HOCNN

ROC AUC: 0.957. Result ID: 698bc9d17a967eddb77159fd.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### CNN Zeng

ROC AUC: 0.953. Result ID: 698bc9d17a967eddb77159ff.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### Expectation-Lou

ROC AUC: 0.947. Result ID: 698bc9d17a967eddb77159fe.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f751e209131ce9ea17b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

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