# Single Epitope Prediction on SAbDab

Source: [Single Epitope Prediction on SAbDab](<https://www.sota2.com/research/sota/single-epitope-prediction-on-sabdab>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-02-26T05:24:19.997Z

Evaluation of models for predicting antibody epitopes using the SAbDab dataset, measured by AUC, AUPR, and MCC.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Single Epitope Prediction |
| Dataset (including any stated split) | SAbDab |
| Metric | AUC |
| Unit | SCALAR |
| Direction | Higher is better |
| Results loaded | 6 of 6 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [AUC](<https://www.sota2.com/research/sota/single-epitope-prediction-on-sabdab.md?metric=AUC>): Higher is better; unit: SCALAR.

- [AUPR](<https://www.sota2.com/research/sota/single-epitope-prediction-on-sabdab.md?metric=AUPR>): Higher is better; unit: SCALAR.

- [MCC](<https://www.sota2.com/research/sota/single-epitope-prediction-on-sabdab.md?metric=MCC>): Higher is better; unit: SCALAR.

## Recorded results

| Method | AUC | Result date | Report paper |
| --- | --- | --- | --- |
| MIPE | 0.852 | Not recorded | 68fa5f5b1e209131ce9e9318 |
| NetBCE | 0.845 | Not recorded | 68fa5f5b1e209131ce9e9318 |
| MIPE | 0.842 | Not recorded | 68fa5f5b1e209131ce9e9318 |
| PesTo | 0.84 | Not recorded | 68fa5f5b1e209131ce9e9318 |
| BepiPred-3.0 | 0.774 | Not recorded | 68fa5f5b1e209131ce9e9318 |
| PECAN | 0.637 | Not recorded | 68fa5f5b1e209131ce9e9318 |

### MIPE

AUC: 0.852. Result ID: 698bc4817a967eddb771358c.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f5b1e209131ce9e9318.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f5b1e209131ce9e9318.md>)

[Implementation](<https://github.com/WangZhiwei9/MIPE>)

Recorded evaluation configuration: {"Structure Source":"Experimental"}. This record does not assert independent reproduction.

### NetBCE

AUC: 0.845. Result ID: 698bc4817a967eddb7713589.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f5b1e209131ce9e9318.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MIPE

AUC: 0.842. Result ID: 698bc4817a967eddb771358d.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f5b1e209131ce9e9318.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f5b1e209131ce9e9318.md>)

[Implementation](<https://github.com/WangZhiwei9/MIPE>)

Recorded evaluation configuration: {"Structure Source":"AlphaFold2"}. This record does not assert independent reproduction.

### PesTo

AUC: 0.84. Result ID: 698bc4817a967eddb771358b.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f5b1e209131ce9e9318.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### BepiPred-3.0

AUC: 0.774. Result ID: 698bc4817a967eddb7713588.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f5b1e209131ce9e9318.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### PECAN

AUC: 0.637. Result ID: 698bc4817a967eddb771358a.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f5b1e209131ce9e9318.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

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