# Signal peptide prediction on SignalP ProteinBERT (test)

Source: [Signal peptide prediction on SignalP ProteinBERT (test)](<https://www.sota2.com/research/sota/signal-peptide-prediction-on-signalp-proteinbert-test>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-05-11T09:50:27.411Z

Evaluation of Signal peptide prediction performance using the test split of the SignalP ProteinBERT dataset, reporting W/L/T and Median Delta metrics.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Signal peptide prediction |
| Dataset (including any stated split) | SignalP ProteinBERT (test) |
| Metric | W/L/T |
| Unit | SCALAR |
| Direction | Lower is better |
| Results loaded | 1 of 1 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [W/L/T](<https://www.sota2.com/research/sota/signal-peptide-prediction-on-signalp-proteinbert-test.md?metric=W%2FL%2FT>): Lower is better; unit: SCALAR.

- [Median Delta](<https://www.sota2.com/research/sota/signal-peptide-prediction-on-signalp-proteinbert-test.md?metric=Median%20Delta>): Lower is better; unit: SCALAR.

## Recorded results

| Method | W/L/T | Result date | Report paper |
| --- | --- | --- | --- |
| Masked-pos MLM+JEPA | 0 | Not recorded | 6a0162b1dbc836b87d823279 |

### Masked-pos MLM+JEPA

W/L/T: 0. Result ID: 6a01a66147f34ce924e3f753.

[Reporting paper](<https://www.sota2.com/research/paper/6a0162b1dbc836b87d823279.md>)

[Method origin paper](<https://www.sota2.com/research/paper/6a0162b1dbc836b87d823279.md>)

Recorded evaluation configuration: {"Base Metric":"AUC","Evaluation Protocol":"Linear Probing","Method Comparison":"Masked-position vs. MLM-only","Backbone Family Size":"n=5"}. This record does not assert independent reproduction.

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