# Protein-protein interaction site prediction on 60 (test) Source: [Protein-protein interaction site prediction on 60 (test)]() Collection index: [llms.txt]() Data updated: 2026-06-02T12:07:21.054Z Evaluation of models on predicting protein-protein interaction sites using the test split of the 60 dataset. A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage. | Scope | Recorded value | | --- | --- | | Task | Protein-protein interaction site prediction | | Dataset (including any stated split) | 60 (test) | | Metric | Accuracy | | Unit | PERCENT | | Direction | Higher is better | | Results loaded | 17 of 17 | | Coverage | All results currently returned for this benchmark | Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol. ## Metrics - [Accuracy](): Higher is better; unit: PERCENT. - [Precision](): Higher is better; unit: PERCENT. - [Recall](): Higher is better; unit: PERCENT. - [F1 Score](): Higher is better; unit: PERCENT. - [MCC](): Higher is better; unit: PERCENT. - [AUROC](): Higher is better; unit: PERCENT. - [AUPRC](): Higher is better; unit: PERCENT. ## Recorded results | Method | Accuracy | Result date | Report paper | | --- | --- | --- | --- | | SGAP-PPIS | 87.9 | Not recorded | 6a1e6435dbd7150506f8583f | | MGMA-PPIS | 87.2 | Not recorded | 6a1e6435dbd7150506f8583f | | AGF-PPIS | 86 | Not recorded | 6a1e6435dbd7150506f8583f | | GHGPR-PPIS | 86 | Not recorded | 6a1e6435dbd7150506f8583f | | AGAT-PPIS | 85.6 | Not recorded | 6a1e6435dbd7150506f8583f | | ASCE-PPIS | 85.6 | Not recorded | 6a1e6435dbd7150506f8583f | | DeepProSite | 84.2 | Not recorded | 6a1e6435dbd7150506f8583f | | ComGAT-PPIS | 82.2 | Not recorded | 6a1e6435dbd7150506f8583f | | MaSIF-site | 78 | Not recorded | 6a1e6435dbd7150506f8583f | | GraphPPIS | 77.6 | Not recorded | 6a1e6435dbd7150506f8583f | | SPPIDER | 75.2 | Not recorded | 6a1e6435dbd7150506f8583f | | ProNA2020 | 73.8 | Not recorded | 6a1e6435dbd7150506f8583f | | DELPHI | 69.7 | Not recorded | 6a1e6435dbd7150506f8583f | | DLPred | 68.2 | Not recorded | 6a1e6435dbd7150506f8583f | | SCRIBER | 66.7 | Not recorded | 6a1e6435dbd7150506f8583f | | DeepPPISP | 65.7 | Not recorded | 6a1e6435dbd7150506f8583f | | PSIVER | 56.1 | Not recorded | 6a1e6435dbd7150506f8583f | ### SGAP-PPIS Accuracy: 87.9. Result ID: 6a1ec752fbc373592c1a4b66. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Unified evaluation protocol"}. This record does not assert independent reproduction. ### MGMA-PPIS Accuracy: 87.2. Result ID: 6a1ec752fbc373592c1a4b64. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Unified evaluation protocol"}. This record does not assert independent reproduction. ### AGF-PPIS Accuracy: 86. Result ID: 6a1ec752fbc373592c1a4b61. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Taken from original publication"}. This record does not assert independent reproduction. ### GHGPR-PPIS Accuracy: 86. Result ID: 6a1ec752fbc373592c1a4b62. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Taken from original publication"}. This record does not assert independent reproduction. ### AGAT-PPIS Accuracy: 85.6. Result ID: 6a1ec752fbc373592c1a4b60. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Taken from original publication"}. This record does not assert independent reproduction. ### ASCE-PPIS Accuracy: 85.6. Result ID: 6a1ec752fbc373592c1a4b63. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Unified evaluation protocol","Features":"62-dimensional feature setting"}. This record does not assert independent reproduction. ### DeepProSite Accuracy: 84.2. Result ID: 6a1ec752fbc373592c1a4b5f. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Taken from original publication"}. This record does not assert independent reproduction. ### ComGAT-PPIS Accuracy: 82.2. Result ID: 6a1ec752fbc373592c1a4b65. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Unified evaluation protocol"}. This record does not assert independent reproduction. ### MaSIF-site Accuracy: 78. Result ID: 6a1ec752fbc373592c1a4b5d. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Taken from original publication"}. This record does not assert independent reproduction. ### GraphPPIS Accuracy: 77.6. Result ID: 6a1ec752fbc373592c1a4b5e. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Taken from original publication"}. This record does not assert independent reproduction. ### SPPIDER Accuracy: 75.2. Result ID: 6a1ec752fbc373592c1a4b5c. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Taken from original publication"}. This record does not assert independent reproduction. ### ProNA2020 Accuracy: 73.8. Result ID: 6a1ec752fbc373592c1a4b57. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Taken from original publication"}. This record does not assert independent reproduction. ### DELPHI Accuracy: 69.7. Result ID: 6a1ec752fbc373592c1a4b5a. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Taken from original publication"}. This record does not assert independent reproduction. ### DLPred Accuracy: 68.2. Result ID: 6a1ec752fbc373592c1a4b59. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Taken from original publication"}. This record does not assert independent reproduction. ### SCRIBER Accuracy: 66.7. Result ID: 6a1ec752fbc373592c1a4b58. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Taken from original publication"}. This record does not assert independent reproduction. ### DeepPPISP Accuracy: 65.7. Result ID: 6a1ec752fbc373592c1a4b5b. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Taken from original publication"}. This record does not assert independent reproduction. ### PSIVER Accuracy: 56.1. Result ID: 6a1ec752fbc373592c1a4b56. [Reporting paper]() Recorded evaluation configuration: {"Evaluation Protocol":"Taken from original publication"}. This record does not assert independent reproduction. Page 1 of 1. This is an index page, not the full collection.