# Protein-protein interaction site prediction on 315-28 (test)

Source: [Protein-protein interaction site prediction on 315-28 (test)](<https://www.sota2.com/research/sota/protein-protein-interaction-site-prediction-on-315-28-test>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-06-02T12:07:20.975Z

Evaluation of models on predicting protein-protein interaction sites using the test split of the 315-28 dataset, measured by AUPRC and MCC.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Protein-protein interaction site prediction |
| Dataset (including any stated split) | 315-28 (test) |
| Metric | AUPRC |
| Unit | PERCENT |
| Direction | Higher is better |
| Results loaded | 8 of 8 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [AUPRC](<https://www.sota2.com/research/sota/protein-protein-interaction-site-prediction-on-315-28-test.md?metric=AUPRC>): Higher is better; unit: PERCENT.

- [MCC](<https://www.sota2.com/research/sota/protein-protein-interaction-site-prediction-on-315-28-test.md?metric=MCC>): Higher is better; unit: SCALAR.

## Recorded results

| Method | AUPRC | Result date | Report paper |
| --- | --- | --- | --- |
| SGAP-PPIS | 62.5 | Not recorded | 6a1e6435dbd7150506f8583f |
| SGAP-PPIS | 62.5 | Not recorded | 6a1e6435dbd7150506f8583f |
| ASCE-PPIS | 59.8 | Not recorded | 6a1e6435dbd7150506f8583f |
| ASCE-PPIS | 59.8 | Not recorded | 6a1e6435dbd7150506f8583f |
| MGMA-PPIS | 58.4 | Not recorded | 6a1e6435dbd7150506f8583f |
| MGMA-PPIS | 58.4 | Not recorded | 6a1e6435dbd7150506f8583f |
| ComGAT-PPIS | 49.4 | Not recorded | 6a1e6435dbd7150506f8583f |
| ComGAT-PPIS | 49.4 | Not recorded | 6a1e6435dbd7150506f8583f |

### SGAP-PPIS

AUPRC: 62.5. Result ID: 6a1ec752fbc373592c1a4b51.

[Reporting paper](<https://www.sota2.com/research/paper/6a1e6435dbd7150506f8583f.md>)

[Method origin paper](<https://www.sota2.com/research/paper/6a1e6435dbd7150506f8583f.md>)

Recorded evaluation configuration: {"evaluation\_protocol":"unified","seeds":"3 random seeds"}. This record does not assert independent reproduction.

### SGAP-PPIS

AUPRC: 62.5. Result ID: 6a1ec752fbc373592c1a4b6a.

[Reporting paper](<https://www.sota2.com/research/paper/6a1e6435dbd7150506f8583f.md>)

[Method origin paper](<https://www.sota2.com/research/paper/6a1e6435dbd7150506f8583f.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Unified evaluation protocol"}. This record does not assert independent reproduction.

### ASCE-PPIS

AUPRC: 59.8. Result ID: 6a1ec752fbc373592c1a4b4e.

[Reporting paper](<https://www.sota2.com/research/paper/6a1e6435dbd7150506f8583f.md>)

Recorded evaluation configuration: {"evaluation\_protocol":"unified","seeds":"3 random seeds"}. This record does not assert independent reproduction.

### ASCE-PPIS

AUPRC: 59.8. Result ID: 6a1ec752fbc373592c1a4b67.

[Reporting paper](<https://www.sota2.com/research/paper/6a1e6435dbd7150506f8583f.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Unified evaluation protocol"}. This record does not assert independent reproduction.

### MGMA-PPIS

AUPRC: 58.4. Result ID: 6a1ec752fbc373592c1a4b4f.

[Reporting paper](<https://www.sota2.com/research/paper/6a1e6435dbd7150506f8583f.md>)

Recorded evaluation configuration: {"evaluation\_protocol":"unified","seeds":"3 random seeds"}. This record does not assert independent reproduction.

### MGMA-PPIS

AUPRC: 58.4. Result ID: 6a1ec752fbc373592c1a4b68.

[Reporting paper](<https://www.sota2.com/research/paper/6a1e6435dbd7150506f8583f.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Unified evaluation protocol"}. This record does not assert independent reproduction.

### ComGAT-PPIS

AUPRC: 49.4. Result ID: 6a1ec752fbc373592c1a4b50.

[Reporting paper](<https://www.sota2.com/research/paper/6a1e6435dbd7150506f8583f.md>)

Recorded evaluation configuration: {"evaluation\_protocol":"unified","seeds":"3 random seeds"}. This record does not assert independent reproduction.

### ComGAT-PPIS

AUPRC: 49.4. Result ID: 6a1ec752fbc373592c1a4b69.

[Reporting paper](<https://www.sota2.com/research/paper/6a1e6435dbd7150506f8583f.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Unified evaluation protocol"}. This record does not assert independent reproduction.

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