# Perturbation Prediction on PDO (OOD)

Source: [Perturbation Prediction on PDO (OOD)](<https://www.sota2.com/research/sota/perturbation-prediction-on-pdo-ood>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-03-06T07:48:31.975Z

Evaluation of model performance on Perturbation Prediction using the PDO (OOD) dataset, measured by MMD distance.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Perturbation Prediction |
| Dataset (including any stated split) | PDO (OOD) |
| Metric | MMD Distance |
| Unit | SCALAR |
| Direction | Lower is better |
| Results loaded | 11 of 11 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [MMD Distance](<https://www.sota2.com/research/sota/perturbation-prediction-on-pdo-ood.md?metric=MMD%20Distance>): Lower is better; unit: SCALAR.

## Recorded results

| Method | MMD Distance | Result date | Report paper |
| --- | --- | --- | --- |
| Energy | 0.0022 | Not recorded | 69aa5f682d603e6de3e4173d |
| SWD | 0.0026 | Not recorded | 69aa5f682d603e6de3e4173d |
| FM | 0.0053 | Not recorded | 69aa5f682d603e6de3e4173d |
| Energy | 0.0191 | Not recorded | 69aa5f682d603e6de3e4173d |
| SWD | 0.0197 | Not recorded | 69aa5f682d603e6de3e4173d |
| FM | 0.0208 | Not recorded | 69aa5f682d603e6de3e4173d |
| FM | 0.0227 | Not recorded | 69aa5f682d603e6de3e4173d |
| SWD | 0.0259 | Not recorded | 69aa5f682d603e6de3e4173d |
| scGen | 0.0265 | Not recorded | 69aa5f682d603e6de3e4173d |
| Energy | 0.0298 | Not recorded | 69aa5f682d603e6de3e4173d |
| CellOT | 0.0304 | Not recorded | 69aa5f682d603e6de3e4173d |

### Energy

MMD Distance: 0.0022. Result ID: 69aa86a26dbb7075b9540767.

[Reporting paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Oracle"}. This record does not assert independent reproduction.

### SWD

MMD Distance: 0.0026. Result ID: 69aa86a26dbb7075b9540764.

[Reporting paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Oracle"}. This record does not assert independent reproduction.

### FM

MMD Distance: 0.0053. Result ID: 69aa86a26dbb7075b954076a.

[Reporting paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Oracle"}. This record does not assert independent reproduction.

### Energy

MMD Distance: 0.0191. Result ID: 69aa86a26dbb7075b9540766.

[Reporting paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Semi-supervised"}. This record does not assert independent reproduction.

### SWD

MMD Distance: 0.0197. Result ID: 69aa86a26dbb7075b9540763.

[Reporting paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Semi-supervised"}. This record does not assert independent reproduction.

### FM

MMD Distance: 0.0208. Result ID: 69aa86a26dbb7075b9540769.

[Reporting paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Semi-supervised"}. This record does not assert independent reproduction.

### FM

MMD Distance: 0.0227. Result ID: 69aa86a26dbb7075b9540768.

[Reporting paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Supervised"}. This record does not assert independent reproduction.

### SWD

MMD Distance: 0.0259. Result ID: 69aa86a26dbb7075b9540762.

[Reporting paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Supervised"}. This record does not assert independent reproduction.

### scGen

MMD Distance: 0.0265. Result ID: 69aa86a26dbb7075b954076b.

[Reporting paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Semi-supervised"}. This record does not assert independent reproduction.

### Energy

MMD Distance: 0.0298. Result ID: 69aa86a26dbb7075b9540765.

[Reporting paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Supervised"}. This record does not assert independent reproduction.

### CellOT

MMD Distance: 0.0304. Result ID: 69aa86a26dbb7075b954076c.

[Reporting paper](<https://www.sota2.com/research/paper/69aa5f682d603e6de3e4173d.md>)

Recorded evaluation configuration: {"Evaluation Protocol":"Semi-supervised"}. This record does not assert independent reproduction.

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