# Multi-cohort Biomarker Classification on CPTAC Source: [Multi-cohort Biomarker Classification on CPTAC]() Collection index: [llms.txt]() Data updated: 2026-02-26T05:53:31.242Z Evaluation of classification performance across multiple CPTAC cancer cohorts (including LUAD, BRCA, COAD, and NSCLC) based on specific molecular biomarkers. A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage. | Scope | Recorded value | | --- | --- | | Task | Classification | | Dataset (including any stated split) | CPTAC | | Metric | NSCLC ST Accuracy | | Unit | PERCENT | | Direction | Higher is better | | Results loaded | 19 of 19 | | Coverage | All results currently returned for this benchmark | Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol. ## Metrics - [NSCLC ST Accuracy](): Higher is better; unit: PERCENT. - [LUAD STK11 Accuracy](): Higher is better; unit: PERCENT. - [LUAD EGFR Accuracy](): Higher is better; unit: PERCENT. - [LUAD TP53 Accuracy](): Higher is better; unit: PERCENT. - [LUAD KRAS Accuracy](): Higher is better; unit: PERCENT. - [BRCA ESR1 Accuracy](): Higher is better; unit: PERCENT. - [BRCA PGR Accuracy](): Higher is better; unit: PERCENT. - [BRCA ERBB2 Accuracy](): Higher is better; unit: PERCENT. - [BRCA PIK3CA Accuracy](): Higher is better; unit: PERCENT. - [MSI Accuracy](): Higher is better; unit: PERCENT. - [BRAF Accuracy](): Higher is better; unit: PERCENT. - [COAD LN Accuracy](): Higher is better; unit: PERCENT. - [COAD KRAS Accuracy](): Higher is better; unit: PERCENT. - [COAD Side Accuracy](): Higher is better; unit: PERCENT. - [COAD PIK3CA Accuracy](): Higher is better; unit: PERCENT. - [Average Accuracy](): Higher is better; unit: PERCENT. ## Recorded results | Method | NSCLC ST Accuracy | Result date | Report paper | | --- | --- | --- | --- | | COBRA-V2 | 99 | Not recorded | 68fa77981e209131cea743e8 | | COBRA-V2 | 98.9 | Not recorded | 68fa77981e209131cea743e8 | | Virchow2 | 98.3 | Not recorded | 68fa77981e209131cea743e8 | | CONCH | 97.8 | Not recorded | 68fa77981e209131cea743e8 | | COBRA-H0 | 97.6 | Not recorded | 68fa77981e209131cea743e8 | | COBRA-UNI | 97.2 | Not recorded | 68fa77981e209131cea743e8 | | COBRA-H0 | 97.1 | Not recorded | 68fa77981e209131cea743e8 | | COBRA-UNI | 97.1 | Not recorded | 68fa77981e209131cea743e8 | | COBRA-CTP | 96.6 | Not recorded | 68fa77981e209131cea743e8 | | COBRA-CTP | 96.5 | Not recorded | 68fa77981e209131cea743e8 | | GigaPath | 96.2 | Not recorded | 68fa77981e209131cea743e8 | | CHIEF | 95.8 | Not recorded | 68fa77981e209131cea743e8 | | MADELEINE | 95.4 | Not recorded | 68fa77981e209131cea743e8 | | H-Optimus | 92.9 | Not recorded | 68fa77981e209131cea743e8 | | UNI | 92.2 | Not recorded | 68fa77981e209131cea743e8 | | PRISM | 91.6 | Not recorded | 68fa77981e209131cea743e8 | | CTransPath | 91.5 | Not recorded | 68fa77981e209131cea743e8 | | GigaPath-SE | 90.2 | Not recorded | 68fa77981e209131cea743e8 | | Virchow | 81.7 | Not recorded | 68fa77981e209131cea743e8 | ### COBRA-V2 NSCLC ST Accuracy: 99. Result ID: 69954beb3badfaffe63b1d3d. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"magnification":"5x","aggregation\_mode":"multi-FM weighting (Eq. 8)","backbone":"Virchow-2"}. This record does not assert independent reproduction. ### COBRA-V2 NSCLC ST Accuracy: 98.9. Result ID: 69954beb3badfaffe63b1d3c. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"magnification":"5x","aggregation\_mode":"weighted aggregation (Eq. 6)","backbone":"Virchow-2"}. This record does not assert independent reproduction. ### Virchow2 NSCLC ST Accuracy: 98.3. Result ID: 69954beb3badfaffe63b1d31. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"magnification":"5x"}. This record does not assert independent reproduction. ### CONCH NSCLC ST Accuracy: 97.8. Result ID: 69954beb3badfaffe63b1d30. [Reporting paper]() Recorded evaluation configuration: {"magnification":"5x"}. This record does not assert independent reproduction. ### COBRA-H0 NSCLC ST Accuracy: 97.6. Result ID: 69954beb3badfaffe63b1d39. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"magnification":"5x","aggregation\_mode":"weighted aggregation (Eq. 6)","backbone":"H-Optimus-0"}. This record does not assert independent reproduction. ### COBRA-UNI NSCLC ST Accuracy: 97.2. Result ID: 69954beb3badfaffe63b1d35. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"magnification":"5x","aggregation\_mode":"mean over patch embeddings","backbone":"UNI"}. This record does not assert independent reproduction. ### COBRA-H0 NSCLC ST Accuracy: 97.1. Result ID: 69954beb3badfaffe63b1d36. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"magnification":"5x","aggregation\_mode":"mean over patch embeddings","backbone":"H-Optimus-0"}. This record does not assert independent reproduction. ### COBRA-UNI NSCLC ST Accuracy: 97.1. Result ID: 69954beb3badfaffe63b1d3a. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"magnification":"5x","aggregation\_mode":"weighted aggregation (Eq. 6)","backbone":"UNI"}. This record does not assert independent reproduction. ### COBRA-CTP NSCLC ST Accuracy: 96.6. Result ID: 69954beb3badfaffe63b1d37. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"magnification":"5x","aggregation\_mode":"mean over patch embeddings","backbone":"CTransPath"}. This record does not assert independent reproduction. ### COBRA-CTP NSCLC ST Accuracy: 96.5. Result ID: 69954beb3badfaffe63b1d38. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"magnification":"5x","aggregation\_mode":"weighted aggregation (Eq. 6)","backbone":"CTransPath"}. This record does not assert independent reproduction. ### GigaPath NSCLC ST Accuracy: 96.2. Result ID: 69954bea3badfaffe63b1d2e. [Reporting paper]() Recorded evaluation configuration: {"magnification":"5x"}. This record does not assert independent reproduction. ### CHIEF NSCLC ST Accuracy: 95.8. Result ID: 69954beb3badfaffe63b1d3b. [Reporting paper]() Recorded evaluation configuration: {"magnification":"5x"}. This record does not assert independent reproduction. ### MADELEINE NSCLC ST Accuracy: 95.4. Result ID: 69954beb3badfaffe63b1d34. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"magnification":"5x"}. This record does not assert independent reproduction. ### H-Optimus NSCLC ST Accuracy: 92.9. Result ID: 69954bea3badfaffe63b1d2f. [Reporting paper]() Recorded evaluation configuration: {"magnification":"5x"}. This record does not assert independent reproduction. ### UNI NSCLC ST Accuracy: 92.2. Result ID: 69954bea3badfaffe63b1d2d. [Reporting paper]() Recorded evaluation configuration: {"magnification":"5x"}. This record does not assert independent reproduction. ### PRISM NSCLC ST Accuracy: 91.6. Result ID: 69954beb3badfaffe63b1d33. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"magnification":"5x"}. This record does not assert independent reproduction. ### CTransPath NSCLC ST Accuracy: 91.5. Result ID: 69954bea3badfaffe63b1d2c. [Reporting paper]() Recorded evaluation configuration: {"magnification":"5x"}. This record does not assert independent reproduction. ### GigaPath-SE NSCLC ST Accuracy: 90.2. Result ID: 69954beb3badfaffe63b1d32. [Reporting paper]() Recorded evaluation configuration: {"magnification":"5x","slide\_encoder":true}. This record does not assert independent reproduction. ### Virchow NSCLC ST Accuracy: 81.7. Result ID: 69954bea3badfaffe63b1d2b. [Reporting paper]() Recorded evaluation configuration: {"magnification":"5x"}. This record does not assert independent reproduction. Page 1 of 1. This is an index page, not the full collection.