# Molecular property prediction on PPI 50-shot (test)

Source: [Molecular property prediction on PPI 50-shot (test)](<https://www.sota2.com/research/sota/molecular-property-prediction-on-ppi-50-shot-test>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-05-18T06:27:29.876Z

Evaluation of model performance on predicting molecular properties using the 50-shot setting on the test split of the PPI dataset, typically measured using ROC-AUC.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Molecular property prediction |
| Dataset (including any stated split) | PPI 50-shot (test) |
| Metric | ROC-AUC |
| Unit | SCALAR |
| Direction | Higher is better |
| Results loaded | 25 of 25 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [ROC-AUC](<https://www.sota2.com/research/sota/molecular-property-prediction-on-ppi-50-shot-test.md?metric=ROC-AUC>): Higher is better; unit: SCALAR.

## Recorded results

| Method | ROC-AUC | Result date | Report paper |
| --- | --- | --- | --- |
| SUPThard | 0.5742 | Not recorded | 68fa72361e209131cea54f7c |
| SUPTsoft | 0.5726 | Not recorded | 68fa72361e209131cea54f7c |
| SUPThard | 0.5658 | Not recorded | 68fa72361e209131cea54f7c |
| SUPTsoft | 0.5658 | Not recorded | 68fa72361e209131cea54f7c |
| SUPTsoft | 0.5629 | Not recorded | 68fa72361e209131cea54f7c |
| SUPThard | 0.5616 | Not recorded | 68fa72361e209131cea54f7c |
| SUPTsoft | 0.5615 | Not recorded | 68fa72361e209131cea54f7c |
| SUPThard | 0.5612 | Not recorded | 68fa72361e209131cea54f7c |
| GPF-plus | 0.5288 | Not recorded | 68fa72361e209131cea54f7c |
| GPF | 0.5279 | Not recorded | 68fa72361e209131cea54f7c |
| GPF-plus | 0.5244 | Not recorded | 68fa72361e209131cea54f7c |
| GPF | 0.5239 | Not recorded | 68fa72361e209131cea54f7c |
| GPF-plus | 0.5212 | Not recorded | 68fa72361e209131cea54f7c |
| GPF | 0.5205 | Not recorded | 68fa72361e209131cea54f7c |
| GPF-plus | 0.5148 | Not recorded | 68fa72361e209131cea54f7c |
| GPF | 0.5142 | Not recorded | 68fa72361e209131cea54f7c |
| SUPThard | 0.5048 | Not recorded | 68fa72361e209131cea54f7c |
| SUPTsoft | 0.5032 | Not recorded | 68fa72361e209131cea54f7c |
| FT | 0.4994 | Not recorded | 68fa72361e209131cea54f7c |
| FT | 0.4879 | Not recorded | 68fa72361e209131cea54f7c |
| FT | 0.4817 | Not recorded | 68fa72361e209131cea54f7c |
| FT | 0.4762 | Not recorded | 68fa72361e209131cea54f7c |
| FT | 0.4633 | Not recorded | 68fa72361e209131cea54f7c |
| GPF-plus | 0.4608 | Not recorded | 68fa72361e209131cea54f7c |
| GPF | 0.46 | Not recorded | 68fa72361e209131cea54f7c |

### SUPThard

ROC-AUC: 0.5742. Result ID: 6a0ab07e47f34ce924f015a1.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"EdgePred","Shots":"50"}. This record does not assert independent reproduction.

### SUPTsoft

ROC-AUC: 0.5726. Result ID: 6a0ab07e47f34ce924f015a2.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"EdgePred","Shots":"50"}. This record does not assert independent reproduction.

### SUPThard

ROC-AUC: 0.5658. Result ID: 6a0ab07e47f34ce924f01592.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"AttrMasking","Shots":"50"}. This record does not assert independent reproduction.

### SUPTsoft

ROC-AUC: 0.5658. Result ID: 6a0ab07e47f34ce924f01593.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"AttrMasking","Shots":"50"}. This record does not assert independent reproduction.

### SUPTsoft

ROC-AUC: 0.5629. Result ID: 6a0ab07e47f34ce924f0158e.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"Infomax","Shots":"50"}. This record does not assert independent reproduction.

### SUPThard

ROC-AUC: 0.5616. Result ID: 6a0ab07e47f34ce924f0158d.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"Infomax","Shots":"50"}. This record does not assert independent reproduction.

### SUPTsoft

ROC-AUC: 0.5615. Result ID: 6a0ab07e47f34ce924f01598.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"ContextPred","Shots":"50"}. This record does not assert independent reproduction.

### SUPThard

ROC-AUC: 0.5612. Result ID: 6a0ab07e47f34ce924f01597.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"ContextPred","Shots":"50"}. This record does not assert independent reproduction.

### GPF-plus

ROC-AUC: 0.5288. Result ID: 6a0ab07e47f34ce924f015a0.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72d01e209131cea58ad5.md>)

[Implementation](<https://github.com/zjunet/GPF>)

Recorded evaluation configuration: {"Pre-training strategy":"EdgePred","Shots":"50"}. This record does not assert independent reproduction.

### GPF

ROC-AUC: 0.5279. Result ID: 6a0ab07e47f34ce924f0159f.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72d01e209131cea58ad5.md>)

[Implementation](<https://github.com/zjunet/GPF>)

Recorded evaluation configuration: {"Pre-training strategy":"EdgePred","Shots":"50"}. This record does not assert independent reproduction.

### GPF-plus

ROC-AUC: 0.5244. Result ID: 6a0ab07e47f34ce924f0158c.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72d01e209131cea58ad5.md>)

[Implementation](<https://github.com/zjunet/GPF>)

Recorded evaluation configuration: {"Pre-training strategy":"Infomax","Shots":"50"}. This record does not assert independent reproduction.

### GPF

ROC-AUC: 0.5239. Result ID: 6a0ab07e47f34ce924f0158b.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72d01e209131cea58ad5.md>)

[Implementation](<https://github.com/zjunet/GPF>)

Recorded evaluation configuration: {"Pre-training strategy":"Infomax","Shots":"50"}. This record does not assert independent reproduction.

### GPF-plus

ROC-AUC: 0.5212. Result ID: 6a0ab07e47f34ce924f01591.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72d01e209131cea58ad5.md>)

[Implementation](<https://github.com/zjunet/GPF>)

Recorded evaluation configuration: {"Pre-training strategy":"AttrMasking","Shots":"50"}. This record does not assert independent reproduction.

### GPF

ROC-AUC: 0.5205. Result ID: 6a0ab07e47f34ce924f01590.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72d01e209131cea58ad5.md>)

[Implementation](<https://github.com/zjunet/GPF>)

Recorded evaluation configuration: {"Pre-training strategy":"AttrMasking","Shots":"50"}. This record does not assert independent reproduction.

### GPF-plus

ROC-AUC: 0.5148. Result ID: 6a0ab07e47f34ce924f01596.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72d01e209131cea58ad5.md>)

[Implementation](<https://github.com/zjunet/GPF>)

Recorded evaluation configuration: {"Pre-training strategy":"ContextPred","Shots":"50"}. This record does not assert independent reproduction.

### GPF

ROC-AUC: 0.5142. Result ID: 6a0ab07e47f34ce924f01595.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72d01e209131cea58ad5.md>)

[Implementation](<https://github.com/zjunet/GPF>)

Recorded evaluation configuration: {"Pre-training strategy":"ContextPred","Shots":"50"}. This record does not assert independent reproduction.

### SUPThard

ROC-AUC: 0.5048. Result ID: 6a0ab07e47f34ce924f0159c.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"GCL","Shots":"50"}. This record does not assert independent reproduction.

### SUPTsoft

ROC-AUC: 0.5032. Result ID: 6a0ab07e47f34ce924f0159d.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"GCL","Shots":"50"}. This record does not assert independent reproduction.

### FT

ROC-AUC: 0.4994. Result ID: 6a0ab07e47f34ce924f01599.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"GCL","Shots":"50"}. This record does not assert independent reproduction.

### FT

ROC-AUC: 0.4879. Result ID: 6a0ab07e47f34ce924f0158a.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"Infomax","Shots":"50"}. This record does not assert independent reproduction.

### FT

ROC-AUC: 0.4817. Result ID: 6a0ab07e47f34ce924f0158f.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"AttrMasking","Shots":"50"}. This record does not assert independent reproduction.

### FT

ROC-AUC: 0.4762. Result ID: 6a0ab07e47f34ce924f0159e.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"EdgePred","Shots":"50"}. This record does not assert independent reproduction.

### FT

ROC-AUC: 0.4633. Result ID: 6a0ab07e47f34ce924f01594.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

Recorded evaluation configuration: {"Pre-training strategy":"ContextPred","Shots":"50"}. This record does not assert independent reproduction.

### GPF-plus

ROC-AUC: 0.4608. Result ID: 6a0ab07e47f34ce924f0159b.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72d01e209131cea58ad5.md>)

[Implementation](<https://github.com/zjunet/GPF>)

Recorded evaluation configuration: {"Pre-training strategy":"GCL","Shots":"50"}. This record does not assert independent reproduction.

### GPF

ROC-AUC: 0.46. Result ID: 6a0ab07e47f34ce924f0159a.

[Reporting paper](<https://www.sota2.com/research/paper/68fa72361e209131cea54f7c.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72d01e209131cea58ad5.md>)

[Implementation](<https://github.com/zjunet/GPF>)

Recorded evaluation configuration: {"Pre-training strategy":"GCL","Shots":"50"}. This record does not assert independent reproduction.

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