# Molecular Generation on jak2 (top-hit 5% docking score)

Source: [Molecular Generation on jak2 (top-hit 5% docking score)](<https://www.sota2.com/research/sota/molecular-generation-on-jak2-top-hit-5-percent-docking-score>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-04-03T08:08:31.536Z

Evaluation of molecular generation performance on the jak2 dataset, specifically measuring the top-hit 5% docking score.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Molecular Generation |
| Dataset (including any stated split) | jak2 |
| Metric | Top-Hit 5% Docking Score (kcal/mol) |
| Unit | OTHER |
| Direction | Lower is better |
| Results loaded | 29 of 29 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [Top-Hit 5% Docking Score (kcal/mol)](<https://www.sota2.com/research/sota/molecular-generation-on-jak2-top-hit-5-percent-docking-score.md?metric=Top-Hit%205%25%20Docking%20Score%20(kcal%2Fmol)>): Lower is better; unit: OTHER.

## Recorded results

| Method | Top-Hit 5% Docking Score (kcal/mol) | Result date | Report paper |
| --- | --- | --- | --- |
| SoftMol | -12.807 | Not recorded | 697c3b71a8b01e76cc8da770 |
| SoftMol | -12.58 | Not recorded | 697c3b71a8b01e76cc8da770 |
| f-RAG | -11.842 | Not recorded | 697c3b71a8b01e76cc8da770 |
| GEAM | -11.816 | Not recorded | 697c3b71a8b01e76cc8da770 |
| ChemBFN | -11.69 | Not recorded | 68fa494e1e209131ce9361cd |
| ChemBFN | -11.666 | Not recorded | 68fa494e1e209131ce9361cd |
| GenMol | -10.417 | Not recorded | 697c3b71a8b01e76cc8da770 |
| Graph-GA | -10.167 | Not recorded | 697c3b71a8b01e76cc8da770 |
| MOOD-S++ | -10.163 | Not recorded | 69cf49810636e5bf4afcda09 |
| MOOD | -10.147 | Not recorded | 697c3b71a8b01e76cc8da770 |
| MOOD | -10.147 | Not recorded | 68fa494e1e209131ce9361cd |
| MOOD | -10.147 | Not recorded | 69cf49810636e5bf4afcda09 |
| FREED | -9.735 | Not recorded | 697c3b71a8b01e76cc8da770 |
| FREED | -9.624 | Not recorded | 68fa494e1e209131ce9361cd |
| PS-VAE | -9.464 | Not recorded | 697c3b71a8b01e76cc8da770 |
| RationaleRL | -9.398 | Not recorded | 697c3b71a8b01e76cc8da770 |
| MARS | -9.15 | Not recorded | 697c3b71a8b01e76cc8da770 |
| GDSS | -8.926 | Not recorded | 68fa494e1e209131ce9361cd |
| JTVAE | -8.885 | Not recorded | 697c3b71a8b01e76cc8da770 |
| GA+D | -8.61 | Not recorded | 697c3b71a8b01e76cc8da770 |
| GEGL | -8.601 | Not recorded | 697c3b71a8b01e76cc8da770 |
| Genetic GFN | -8.539 | Not recorded | 697c3b71a8b01e76cc8da770 |
| HierVAE | -8.285 | Not recorded | 697c3b71a8b01e76cc8da770 |
| HierVAE | -8.285 | Not recorded | 68fa494e1e209131ce9361cd |
| REINVENT | -8.165 | Not recorded | 697c3b71a8b01e76cc8da770 |
| REINVENT | -8.165 | Not recorded | 68fa494e1e209131ce9361cd |
| MORLD | -7.816 | Not recorded | 697c3b71a8b01e76cc8da770 |
| MORLD | -7.816 | Not recorded | 68fa494e1e209131ce9361cd |
| RetMol | -7.133 | Not recorded | 697c3b71a8b01e76cc8da770 |

### SoftMol

Top-Hit 5% Docking Score (kcal/mol): -12.807. Result ID: 6998f77e5698665ec45c9b59.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

Recorded evaluation configuration: {"unconstrained":true}. This record does not assert independent reproduction.

### SoftMol

Top-Hit 5% Docking Score (kcal/mol): -12.58. Result ID: 6998f77e5698665ec45c9b58.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

Recorded evaluation configuration: {"unconstrained":false}. This record does not assert independent reproduction.

### f-RAG

Top-Hit 5% Docking Score (kcal/mol): -11.842. Result ID: 6998f77e5698665ec45c9b56.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa75be1e209131cea69a42.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GEAM

Top-Hit 5% Docking Score (kcal/mol): -11.816. Result ID: 6998f77e5698665ec45c9b55.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa736b1e209131cea5c644.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### ChemBFN

Top-Hit 5% Docking Score (kcal/mol): -11.69. Result ID: 699a89e85698665ec414035d.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

Recorded evaluation configuration: {"Strategy":"strategy 3","Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### ChemBFN

Top-Hit 5% Docking Score (kcal/mol): -11.666. Result ID: 699a89e85698665ec414035e.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

Recorded evaluation configuration: {"Strategy":"strategy 4","Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### GenMol

Top-Hit 5% Docking Score (kcal/mol): -10.417. Result ID: 6998f77e5698665ec45c9b57.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa7a241e209131cea81483.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### Graph-GA

Top-Hit 5% Docking Score (kcal/mol): -10.167. Result ID: 6998f77e5698665ec45c9b4a.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MOOD-S++

Top-Hit 5% Docking Score (kcal/mol): -10.163. Result ID: 69cf756747f34ce924b92f7e.

[Reporting paper](<https://www.sota2.com/research/paper/69cf49810636e5bf4afcda09.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69cf49810636e5bf4afcda09.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MOOD

Top-Hit 5% Docking Score (kcal/mol): -10.147. Result ID: 6998f77e5698665ec45c9b52.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa44741e209131ce911457.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MOOD

Top-Hit 5% Docking Score (kcal/mol): -10.147. Result ID: 699a89e85698665ec414035c.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa44741e209131ce911457.md>)

Recorded evaluation configuration: {"Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### MOOD

Top-Hit 5% Docking Score (kcal/mol): -10.147. Result ID: 69cf756747f34ce924b92f7d.

[Reporting paper](<https://www.sota2.com/research/paper/69cf49810636e5bf4afcda09.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa44741e209131ce911457.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### FREED

Top-Hit 5% Docking Score (kcal/mol): -9.735. Result ID: 6998f77e5698665ec45c9b4f.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f221e209131ce9e7cd3.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### FREED

Top-Hit 5% Docking Score (kcal/mol): -9.624. Result ID: 699a89e85698665ec414035a.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f221e209131ce9e7cd3.md>)

Recorded evaluation configuration: {"Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### PS-VAE

Top-Hit 5% Docking Score (kcal/mol): -9.464. Result ID: 6998f77e5698665ec45c9b51.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f351e209131ce9e83c3.md>)

[Implementation](<https://github.com/THUNLP-MT/PS-VAE>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### RationaleRL

Top-Hit 5% Docking Score (kcal/mol): -9.398. Result ID: 6998f77e5698665ec45c9b4e.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa67d21e209131cea18ad1.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MARS

Top-Hit 5% Docking Score (kcal/mol): -9.15. Result ID: 6998f77e5698665ec45c9b50.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f191e209131ce9e7868.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GDSS

Top-Hit 5% Docking Score (kcal/mol): -8.926. Result ID: 699a89e85698665ec414035b.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6cc81e209131cea35fa6.md>)

Recorded evaluation configuration: {"Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### JTVAE

Top-Hit 5% Docking Score (kcal/mol): -8.885. Result ID: 6998f77e5698665ec45c9b48.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa658c1e209131cea0b09c.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GA+D

Top-Hit 5% Docking Score (kcal/mol): -8.61. Result ID: 6998f77e5698665ec45c9b49.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa3b4e1e209131ce8d1e00.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GEGL

Top-Hit 5% Docking Score (kcal/mol): -8.601. Result ID: 6998f77e5698665ec45c9b4d.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f0b1e209131ce9e72c7.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### Genetic GFN

Top-Hit 5% Docking Score (kcal/mol): -8.539. Result ID: 6998f77e5698665ec45c9b54.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f6b1e209131ce9e9a81.md>)

[Implementation](<https://github.com/hyeonahkimm/genetic_gfn>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### HierVAE

Top-Hit 5% Docking Score (kcal/mol): -8.285. Result ID: 6998f77e5698665ec45c9b4c.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa675a1e209131cea15c36.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### HierVAE

Top-Hit 5% Docking Score (kcal/mol): -8.285. Result ID: 699a89e85698665ec4140359.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa675a1e209131cea15c36.md>)

Recorded evaluation configuration: {"Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### REINVENT

Top-Hit 5% Docking Score (kcal/mol): -8.165. Result ID: 6998f77e5698665ec45c9b47.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa639a1e209131ce9ff868.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### REINVENT

Top-Hit 5% Docking Score (kcal/mol): -8.165. Result ID: 699a89e85698665ec4140357.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa639a1e209131ce9ff868.md>)

Recorded evaluation configuration: {"Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### MORLD

Top-Hit 5% Docking Score (kcal/mol): -7.816. Result ID: 6998f77e5698665ec45c9b4b.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MORLD

Top-Hit 5% Docking Score (kcal/mol): -7.816. Result ID: 699a89e85698665ec4140358.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

Recorded evaluation configuration: {"Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### RetMol

Top-Hit 5% Docking Score (kcal/mol): -7.133. Result ID: 6998f77e5698665ec45c9b53.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f491e209131ce9e8c0b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

Page 1 of 1. This is an index page, not the full collection.
