# Molecular Generation on fa7 (top-hit 5% docking score)

Source: [Molecular Generation on fa7 (top-hit 5% docking score)](<https://www.sota2.com/research/sota/molecular-generation-on-fa7-top-hit-5-percent-docking-score>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-04-03T08:08:31.455Z

Evaluation of molecular generation models on the fa7 dataset, specifically measuring performance using the top-hit 5% docking score.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Molecular Generation |
| Dataset (including any stated split) | fa7 |
| Metric | Top-Hit 5% Docking Score (kcal/mol) |
| Unit | OTHER |
| Direction | Lower is better |
| Results loaded | 29 of 29 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [Top-Hit 5% Docking Score (kcal/mol)](<https://www.sota2.com/research/sota/molecular-generation-on-fa7-top-hit-5-percent-docking-score.md?metric=Top-Hit%205%25%20Docking%20Score%20(kcal%2Fmol)>): Lower is better; unit: OTHER.

## Recorded results

| Method | Top-Hit 5% Docking Score (kcal/mol) | Result date | Report paper |
| --- | --- | --- | --- |
| SoftMol | -11.235 | Not recorded | 697c3b71a8b01e76cc8da770 |
| SoftMol | -11.031 | Not recorded | 697c3b71a8b01e76cc8da770 |
| f-RAG | -9.899 | Not recorded | 697c3b71a8b01e76cc8da770 |
| GEAM | -9.89 | Not recorded | 697c3b71a8b01e76cc8da770 |
| ChemBFN | -9.527 | Not recorded | 68fa494e1e209131ce9361cd |
| ChemBFN | -9.315 | Not recorded | 68fa494e1e209131ce9361cd |
| GenMol | -8.967 | Not recorded | 697c3b71a8b01e76cc8da770 |
| FREED | -8.378 | Not recorded | 697c3b71a8b01e76cc8da770 |
| FREED | -8.297 | Not recorded | 68fa494e1e209131ce9361cd |
| MOOD-S++ | -8.182 | Not recorded | 69cf49810636e5bf4afcda09 |
| MOOD | -8.16 | Not recorded | 697c3b71a8b01e76cc8da770 |
| MOOD | -8.16 | Not recorded | 68fa494e1e209131ce9361cd |
| MOOD | -8.16 | Not recorded | 69cf49810636e5bf4afcda09 |
| RationaleRL | -8.129 | Not recorded | 697c3b71a8b01e76cc8da770 |
| PS-VAE | -8.028 | Not recorded | 697c3b71a8b01e76cc8da770 |
| MARS | -7.839 | Not recorded | 697c3b71a8b01e76cc8da770 |
| GDSS | -7.775 | Not recorded | 68fa494e1e209131ce9361cd |
| JTVAE | -7.683 | Not recorded | 697c3b71a8b01e76cc8da770 |
| GEGL | -7.47 | Not recorded | 697c3b71a8b01e76cc8da770 |
| Graph-GA | -7.365 | Not recorded | 697c3b71a8b01e76cc8da770 |
| Genetic GFN | -7.288 | Not recorded | 697c3b71a8b01e76cc8da770 |
| REINVENT | -7.205 | Not recorded | 697c3b71a8b01e76cc8da770 |
| REINVENT | -7.205 | Not recorded | 68fa494e1e209131ce9361cd |
| HierVAE | -6.812 | Not recorded | 697c3b71a8b01e76cc8da770 |
| HierVAE | -6.812 | Not recorded | 68fa494e1e209131ce9361cd |
| GA+D | -6.539 | Not recorded | 697c3b71a8b01e76cc8da770 |
| MORLD | -6.263 | Not recorded | 697c3b71a8b01e76cc8da770 |
| MORLD | -6.263 | Not recorded | 68fa494e1e209131ce9361cd |
| RetMol | -5.448 | Not recorded | 697c3b71a8b01e76cc8da770 |

### SoftMol

Top-Hit 5% Docking Score (kcal/mol): -11.235. Result ID: 6998f77e5698665ec45c9b21.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

Recorded evaluation configuration: {"unconstrained":true}. This record does not assert independent reproduction.

### SoftMol

Top-Hit 5% Docking Score (kcal/mol): -11.031. Result ID: 6998f77e5698665ec45c9b20.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

Recorded evaluation configuration: {"unconstrained":false}. This record does not assert independent reproduction.

### f-RAG

Top-Hit 5% Docking Score (kcal/mol): -9.899. Result ID: 6998f77e5698665ec45c9b1e.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa75be1e209131cea69a42.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GEAM

Top-Hit 5% Docking Score (kcal/mol): -9.89. Result ID: 6998f77e5698665ec45c9b1d.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa736b1e209131cea5c644.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### ChemBFN

Top-Hit 5% Docking Score (kcal/mol): -9.527. Result ID: 699a89e85698665ec4140345.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

Recorded evaluation configuration: {"Strategy":"strategy 3","Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### ChemBFN

Top-Hit 5% Docking Score (kcal/mol): -9.315. Result ID: 699a89e85698665ec4140346.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

Recorded evaluation configuration: {"Strategy":"strategy 4","Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### GenMol

Top-Hit 5% Docking Score (kcal/mol): -8.967. Result ID: 6998f77e5698665ec45c9b1f.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa7a241e209131cea81483.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### FREED

Top-Hit 5% Docking Score (kcal/mol): -8.378. Result ID: 6998f77e5698665ec45c9b17.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f221e209131ce9e7cd3.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### FREED

Top-Hit 5% Docking Score (kcal/mol): -8.297. Result ID: 699a89e85698665ec4140342.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f221e209131ce9e7cd3.md>)

Recorded evaluation configuration: {"Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### MOOD-S++

Top-Hit 5% Docking Score (kcal/mol): -8.182. Result ID: 69cf756747f34ce924b92f78.

[Reporting paper](<https://www.sota2.com/research/paper/69cf49810636e5bf4afcda09.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69cf49810636e5bf4afcda09.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MOOD

Top-Hit 5% Docking Score (kcal/mol): -8.16. Result ID: 6998f77e5698665ec45c9b1a.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa44741e209131ce911457.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MOOD

Top-Hit 5% Docking Score (kcal/mol): -8.16. Result ID: 699a89e85698665ec4140344.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa44741e209131ce911457.md>)

Recorded evaluation configuration: {"Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### MOOD

Top-Hit 5% Docking Score (kcal/mol): -8.16. Result ID: 69cf756747f34ce924b92f77.

[Reporting paper](<https://www.sota2.com/research/paper/69cf49810636e5bf4afcda09.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa44741e209131ce911457.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### RationaleRL

Top-Hit 5% Docking Score (kcal/mol): -8.129. Result ID: 6998f77e5698665ec45c9b16.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa67d21e209131cea18ad1.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### PS-VAE

Top-Hit 5% Docking Score (kcal/mol): -8.028. Result ID: 6998f77e5698665ec45c9b19.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f351e209131ce9e83c3.md>)

[Implementation](<https://github.com/THUNLP-MT/PS-VAE>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MARS

Top-Hit 5% Docking Score (kcal/mol): -7.839. Result ID: 6998f77e5698665ec45c9b18.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f191e209131ce9e7868.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GDSS

Top-Hit 5% Docking Score (kcal/mol): -7.775. Result ID: 699a89e85698665ec4140343.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6cc81e209131cea35fa6.md>)

Recorded evaluation configuration: {"Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### JTVAE

Top-Hit 5% Docking Score (kcal/mol): -7.683. Result ID: 6998f77e5698665ec45c9b10.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa658c1e209131cea0b09c.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GEGL

Top-Hit 5% Docking Score (kcal/mol): -7.47. Result ID: 6998f77e5698665ec45c9b15.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f0b1e209131ce9e72c7.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### Graph-GA

Top-Hit 5% Docking Score (kcal/mol): -7.365. Result ID: 6998f77e5698665ec45c9b12.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### Genetic GFN

Top-Hit 5% Docking Score (kcal/mol): -7.288. Result ID: 6998f77e5698665ec45c9b1c.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f6b1e209131ce9e9a81.md>)

[Implementation](<https://github.com/hyeonahkimm/genetic_gfn>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### REINVENT

Top-Hit 5% Docking Score (kcal/mol): -7.205. Result ID: 6998f77e5698665ec45c9b0f.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa639a1e209131ce9ff868.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### REINVENT

Top-Hit 5% Docking Score (kcal/mol): -7.205. Result ID: 699a89e85698665ec414033f.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa639a1e209131ce9ff868.md>)

Recorded evaluation configuration: {"Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### HierVAE

Top-Hit 5% Docking Score (kcal/mol): -6.812. Result ID: 6998f77e5698665ec45c9b14.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa675a1e209131cea15c36.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### HierVAE

Top-Hit 5% Docking Score (kcal/mol): -6.812. Result ID: 699a89e85698665ec4140341.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa675a1e209131cea15c36.md>)

Recorded evaluation configuration: {"Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### GA+D

Top-Hit 5% Docking Score (kcal/mol): -6.539. Result ID: 6998f77e5698665ec45c9b11.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa3b4e1e209131ce8d1e00.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MORLD

Top-Hit 5% Docking Score (kcal/mol): -6.263. Result ID: 6998f77e5698665ec45c9b13.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MORLD

Top-Hit 5% Docking Score (kcal/mol): -6.263. Result ID: 699a89e85698665ec4140340.

[Reporting paper](<https://www.sota2.com/research/paper/68fa494e1e209131ce9361cd.md>)

Recorded evaluation configuration: {"Sampling steps":"1,000","Representation format":"SELFIES"}. This record does not assert independent reproduction.

### RetMol

Top-Hit 5% Docking Score (kcal/mol): -5.448. Result ID: 6998f77e5698665ec45c9b1b.

[Reporting paper](<https://www.sota2.com/research/paper/697c3b71a8b01e76cc8da770.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f491e209131ce9e8c0b.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

Page 1 of 1. This is an index page, not the full collection.
