# Metagenome Classification on Metagenome dataset (test)

Source: [Metagenome Classification on Metagenome dataset (test)](<https://www.sota2.com/research/sota/metagenome-classification-on-metagenome-dataset-test>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-02-26T05:46:41.254Z

Evaluation of Metagenome Classification performance on the test split of the Metagenome dataset, measured by Host and Pathogen Average F1 scores.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Metagenome Classification |
| Dataset (including any stated split) | Metagenome dataset (test) |
| Metric | Host F1 |
| Unit | PERCENT |
| Direction | Higher is better |
| Results loaded | 26 of 26 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [Host F1](<https://www.sota2.com/research/sota/metagenome-classification-on-metagenome-dataset-test.md?metric=Host%20F1>): Higher is better; unit: PERCENT.

- [Pathogen F1](<https://www.sota2.com/research/sota/metagenome-classification-on-metagenome-dataset-test.md?metric=Pathogen%20F1>): Higher is better; unit: PERCENT.

## Recorded results

| Method | Host F1 | Result date | Report paper |
| --- | --- | --- | --- |
| MG-Net | 98 | Not recorded | 68fa5f171e209131ce9e76d1 |
| MG-Net | 98 | Not recorded | 68fa5f171e209131ce9e76d1 |
| MG-Net | 97 | Not recorded | 68fa5f171e209131ce9e76d1 |
| MG-Net | 97 | Not recorded | 68fa5f171e209131ce9e76d1 |
| WLK | 88 | Not recorded | 68fa5f171e209131ce9e76d1 |
| WLK | 87 | Not recorded | 68fa5f171e209131ce9e76d1 |
| GSK | 87 | Not recorded | 68fa5f171e209131ce9e76d1 |
| SPK | 86 | Not recorded | 68fa5f171e209131ce9e76d1 |
| SPK | 86 | Not recorded | 68fa5f171e209131ce9e76d1 |
| SPK | 86 | Not recorded | 68fa5f171e209131ce9e76d1 |
| WLK | 86 | Not recorded | 68fa5f171e209131ce9e76d1 |
| GSK | 86 | Not recorded | 68fa5f171e209131ce9e76d1 |
| MG-Net | 86 | Not recorded | 68fa5f171e209131ce9e76d1 |
| Node2Vec | 85 | Not recorded | 68fa5f171e209131ce9e76d1 |
| GSK | 84 | Not recorded | 68fa5f171e209131ce9e76d1 |
| Node2Vec | 82 | Not recorded | 68fa5f171e209131ce9e76d1 |
| Node2Vec | 81 | Not recorded | 68fa5f171e209131ce9e76d1 |
| WLK | 81 | Not recorded | 68fa5f171e209131ce9e76d1 |
| GSK | 79 | Not recorded | 68fa5f171e209131ce9e76d1 |
| SPK | 78 | Not recorded | 68fa5f171e209131ce9e76d1 |
| Seq2Vec | 75.8 | Not recorded | 68fa5f171e209131ce9e76d1 |
| Node2Vec | 74 | Not recorded | 68fa5f171e209131ce9e76d1 |
| Node2Vec | 5 | Not recorded | 68fa5f171e209131ce9e76d1 |
| WLK | 4 | Not recorded | 68fa5f171e209131ce9e76d1 |
| GSK | 3 | Not recorded | 68fa5f171e209131ce9e76d1 |
| SPK | 2 | Not recorded | 68fa5f171e209131ce9e76d1 |

### MG-Net

Host F1: 98. Result ID: 698bbbe37a967eddb770f375.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"MLP"}. This record does not assert independent reproduction.

### MG-Net

Host F1: 98. Result ID: 698bbbe37a967eddb770f376.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"DL"}. This record does not assert independent reproduction.

### MG-Net

Host F1: 97. Result ID: 698bbbe37a967eddb770f373.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"LR"}. This record does not assert independent reproduction.

### MG-Net

Host F1: 97. Result ID: 698bbbe37a967eddb770f374.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"SVM"}. This record does not assert independent reproduction.

### WLK

Host F1: 88. Result ID: 698bbbe37a967eddb770f36a.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"MLP"}. This record does not assert independent reproduction.

### WLK

Host F1: 87. Result ID: 698bbbe37a967eddb770f368.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"LR"}. This record does not assert independent reproduction.

### GSK

Host F1: 87. Result ID: 698bbbe37a967eddb770f36d.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"LR"}. This record does not assert independent reproduction.

### SPK

Host F1: 86. Result ID: 698bbbe37a967eddb770f363.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"LR"}. This record does not assert independent reproduction.

### SPK

Host F1: 86. Result ID: 698bbbe37a967eddb770f364.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"SVM"}. This record does not assert independent reproduction.

### SPK

Host F1: 86. Result ID: 698bbbe37a967eddb770f365.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"MLP"}. This record does not assert independent reproduction.

### WLK

Host F1: 86. Result ID: 698bbbe37a967eddb770f369.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"SVM"}. This record does not assert independent reproduction.

### GSK

Host F1: 86. Result ID: 698bbbe37a967eddb770f36e.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"SVM"}. This record does not assert independent reproduction.

### MG-Net

Host F1: 86. Result ID: 698bbbe37a967eddb770f372.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"Linear"}. This record does not assert independent reproduction.

### Node2Vec

Host F1: 85. Result ID: 698bbbe37a967eddb770f360.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"MLP"}. This record does not assert independent reproduction.

### GSK

Host F1: 84. Result ID: 698bbbe37a967eddb770f36f.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"MLP"}. This record does not assert independent reproduction.

### Node2Vec

Host F1: 82. Result ID: 698bbbe37a967eddb770f35e.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"LR"}. This record does not assert independent reproduction.

### Node2Vec

Host F1: 81. Result ID: 698bbbe37a967eddb770f35f.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"SVM"}. This record does not assert independent reproduction.

### WLK

Host F1: 81. Result ID: 698bbbe37a967eddb770f36b.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"DL"}. This record does not assert independent reproduction.

### GSK

Host F1: 79. Result ID: 698bbbe37a967eddb770f370.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"DL"}. This record does not assert independent reproduction.

### SPK

Host F1: 78. Result ID: 698bbbe37a967eddb770f366.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"DL"}. This record does not assert independent reproduction.

### Seq2Vec

Host F1: 75.8. Result ID: 698bbbe37a967eddb770f371.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"DL"}. This record does not assert independent reproduction.

### Node2Vec

Host F1: 74. Result ID: 698bbbe37a967eddb770f361.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"DL"}. This record does not assert independent reproduction.

### Node2Vec

Host F1: 5. Result ID: 698bbbe37a967eddb770f35d.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"Linear"}. This record does not assert independent reproduction.

### WLK

Host F1: 4. Result ID: 698bbbe37a967eddb770f367.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"Linear"}. This record does not assert independent reproduction.

### GSK

Host F1: 3. Result ID: 698bbbe37a967eddb770f36c.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"Linear"}. This record does not assert independent reproduction.

### SPK

Host F1: 2. Result ID: 698bbbe37a967eddb770f362.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f171e209131ce9e76d1.md>)

Recorded evaluation configuration: {"Classifier":"Linear"}. This record does not assert independent reproduction.

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