# Metabolite Identification on GNPS S

Source: [Metabolite Identification on GNPS S](<https://www.sota2.com/research/sota/metabolite-identification-on-gnps-s>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-03-17T07:40:05.894Z

Evaluation of Metabolite Identification performance on the GNPS S dataset, measured by Accuracy.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Metabolite Identification |
| Dataset (including any stated split) | GNPS S |
| Metric | Accuracy |
| Unit | PERCENT |
| Direction | Higher is better |
| Results loaded | 18 of 18 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [Accuracy](<https://www.sota2.com/research/sota/metabolite-identification-on-gnps-s.md?metric=Accuracy>): Higher is better; unit: PERCENT.

## Recorded results

| Method | Accuracy | Result date | Report paper |
| --- | --- | --- | --- |
| MS2MetGAN | 75.65 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| MS2MetGAN | 73.06 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| CFM-ID | 72.02 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| SF-Matching | 64.77 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| MIDAS | 54.92 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| SF-Matching | 44.04 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| CSU-MS2 | 43.01 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| MIDAS | 40.42 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| CSI:FingerID | 34.72 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| CSI:FingerID | 34.72 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| MAGMa+ | 30.57 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| CSU-MS2 | 29.02 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| CMSSP | 23.83 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| MetFrag | 21.24 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| CMSSP | 18.65 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| MAGMa+ | 16.58 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| CFM-ID | 8.29 | Not recorded | 69b8e0080636e5bf4afbe9ca |
| MetFrag | 6.74 | Not recorded | 69b8e0080636e5bf4afbe9ca |

### MS2MetGAN

Accuracy: 75.65. Result ID: 69b904fc47f34ce924a13394.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MS2MetGAN

Accuracy: 73.06. Result ID: 69b904fc47f34ce924a133e7.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### CFM-ID

Accuracy: 72.02. Result ID: 69b904fc47f34ce924a13390.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### SF-Matching

Accuracy: 64.77. Result ID: 69b904fc47f34ce924a1338d.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MIDAS

Accuracy: 54.92. Result ID: 69b904fc47f34ce924a133df.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### SF-Matching

Accuracy: 44.04. Result ID: 69b904fc47f34ce924a133e0.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### CSU-MS2

Accuracy: 43.01. Result ID: 69b904fc47f34ce924a133e6.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa65501e209131cea09957.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MIDAS

Accuracy: 40.42. Result ID: 69b904fc47f34ce924a1338c.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### CSI:FingerID

Accuracy: 34.72. Result ID: 69b904fc47f34ce924a1338f.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### CSI:FingerID

Accuracy: 34.72. Result ID: 69b904fc47f34ce924a133e2.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MAGMa+

Accuracy: 30.57. Result ID: 69b904fc47f34ce924a133e1.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### CSU-MS2

Accuracy: 29.02. Result ID: 69b904fc47f34ce924a13393.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa65501e209131cea09957.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### CMSSP

Accuracy: 23.83. Result ID: 69b904fc47f34ce924a13392.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MetFrag

Accuracy: 21.24. Result ID: 69b904fc47f34ce924a13391.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### CMSSP

Accuracy: 18.65. Result ID: 69b904fc47f34ce924a133e5.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MAGMa+

Accuracy: 16.58. Result ID: 69b904fc47f34ce924a1338e.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### CFM-ID

Accuracy: 8.29. Result ID: 69b904fc47f34ce924a133e3.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MetFrag

Accuracy: 6.74. Result ID: 69b904fc47f34ce924a133e4.

[Reporting paper](<https://www.sota2.com/research/paper/69b8e0080636e5bf4afbe9ca.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

Page 1 of 1. This is an index page, not the full collection.
