# Link Prediction on Pubmed (AUC-ROC)

Source: [Link Prediction on Pubmed (AUC-ROC)](<https://www.sota2.com/research/sota/link-prediction-on-pubmed-auc-roc>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-06-11T10:45:04.363Z

Evaluation of Link Prediction performance on the Pubmed dataset, measured using the AUC-ROC metric.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Link Prediction |
| Dataset (including any stated split) | Pubmed |
| Metric | AUC-ROC |
| Unit | PERCENT |
| Direction | Higher is better |
| Results loaded | 29 of 29 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [AUC-ROC](<https://www.sota2.com/research/sota/link-prediction-on-pubmed-auc-roc.md?metric=AUC-ROC>): Higher is better; unit: PERCENT.

## Recorded results

| Method | AUC-ROC | Result date | Report paper |
| --- | --- | --- | --- |
| graph NE | 100 | Not recorded | 68fa77ae1e209131cea74ae8 |
| graph NEτ | 100 | Not recorded | 68fa77ae1e209131cea74ae8 |
| DeepWalk | 99.9 | Not recorded | 68fa77ae1e209131cea74ae8 |
| CNE, τ = 0.5 | 99.8 | Not recorded | 68fa77ae1e209131cea74ae8 |
| Laplacian E. | 98.9 | Not recorded | 68fa77ae1e209131cea74ae8 |
| DRGraph | 97.6 | Not recorded | 68fa77ae1e209131cea74ae8 |
| ForceAtlas2 | 97.6 | Not recorded | 68fa77ae1e209131cea74ae8 |
| graph NE | 96.3 | Not recorded | 68fa77ae1e209131cea74ae8 |
| SGtSNEpi | 96 | Not recorded | 68fa77ae1e209131cea74ae8 |
| t-FDP | 93.7 | Not recorded | 68fa77ae1e209131cea74ae8 |
| Laplacian E. | 91.9 | Not recorded | 68fa77ae1e209131cea74ae8 |
| R-GFM | 88.66 | Not recorded | 6a02b493dbc836b87d824d46 |
| RiemannGFM | 86.37 | Not recorded | 6a02b493dbc836b87d824d46 |
| GCOPE | 84.99 | Not recorded | 6a02b493dbc836b87d824d46 |
| SAMGPT | 84.92 | Not recorded | 6a02b493dbc836b87d824d46 |
| MDGFM | 84.78 | Not recorded | 6a02b493dbc836b87d824d46 |
| node2vec | 84.3 | Not recorded | 68fa77ae1e209131cea74ae8 |
| GraspLLM | 75.1 | Not recorded | 6a2a4108d33dfb23e7839294 |
| GraspLLM | 73.6 | Not recorded | 6a2a4108d33dfb23e7839294 |
| GraspLLM | 72.8 | Not recorded | 6a2a4108d33dfb23e7839294 |
| GraspLLM | 71.1 | Not recorded | 6a2a4108d33dfb23e7839294 |
| TEA-GLM | 68.9 | Not recorded | 6a2a4108d33dfb23e7839294 |
| LLaGA | 59.1 | Not recorded | 6a2a4108d33dfb23e7839294 |
| Vicuna-7B-IT | 54.2 | Not recorded | 6a2a4108d33dfb23e7839294 |
| Vicuna-7B-v1.5 | 53.5 | Not recorded | 6a2a4108d33dfb23e7839294 |
| ZeroG | 51.9 | Not recorded | 6a2a4108d33dfb23e7839294 |
| GraphGPT | 51 | Not recorded | 6a2a4108d33dfb23e7839294 |
| GraphCLIP | 50.1 | Not recorded | 6a2a4108d33dfb23e7839294 |
| OFA | 49.2 | Not recorded | 6a2a4108d33dfb23e7839294 |

### graph NE

AUC-ROC: 100. Result ID: 6a27c202fbc373592c242f8d.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

Recorded evaluation configuration: {"d":"128"}. This record does not assert independent reproduction.

### graph NEτ

AUC-ROC: 100. Result ID: 6a27c202fbc373592c242f8e.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

Recorded evaluation configuration: {"d":"128"}. This record does not assert independent reproduction.

### DeepWalk

AUC-ROC: 99.9. Result ID: 6a27c202fbc373592c242f90.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa61691e209131ce9f4333.md>)

Recorded evaluation configuration: {"d":"128"}. This record does not assert independent reproduction.

### CNE, τ = 0.5

AUC-ROC: 99.8. Result ID: 6a27c202fbc373592c242f8f.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa73701e209131cea5c7a3.md>)

Recorded evaluation configuration: {"d":"128"}. This record does not assert independent reproduction.

### Laplacian E.

AUC-ROC: 98.9. Result ID: 6a27c202fbc373592c242f92.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa646e1e209131cea04ae5.md>)

Recorded evaluation configuration: {"d":"128"}. This record does not assert independent reproduction.

### DRGraph

AUC-ROC: 97.6. Result ID: 6a27c202fbc373592c242f95.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa68291e209131cea1a650.md>)

Recorded evaluation configuration: {"d":"2"}. This record does not assert independent reproduction.

### ForceAtlas2

AUC-ROC: 97.6. Result ID: 6a27c202fbc373592c242f96.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

Recorded evaluation configuration: {"d":"2"}. This record does not assert independent reproduction.

### graph NE

AUC-ROC: 96.3. Result ID: 6a27c202fbc373592c242f93.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

Recorded evaluation configuration: {"d":"2"}. This record does not assert independent reproduction.

### SGtSNEpi

AUC-ROC: 96. Result ID: 6a27c202fbc373592c242f94.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa65e31e209131cea0d36b.md>)

Recorded evaluation configuration: {"d":"2"}. This record does not assert independent reproduction.

### t-FDP

AUC-ROC: 93.7. Result ID: 6a27c202fbc373592c242f97.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6eb81e209131cea41c0e.md>)

Recorded evaluation configuration: {"d":"2"}. This record does not assert independent reproduction.

### Laplacian E.

AUC-ROC: 91.9. Result ID: 6a27c202fbc373592c242f98.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa646e1e209131cea04ae5.md>)

Recorded evaluation configuration: {"d":"2"}. This record does not assert independent reproduction.

### R-GFM

AUC-ROC: 88.66. Result ID: 6a03359d47f34ce924e7f27c.

[Reporting paper](<https://www.sota2.com/research/paper/6a02b493dbc836b87d824d46.md>)

[Method origin paper](<https://www.sota2.com/research/paper/6a02b493dbc836b87d824d46.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### RiemannGFM

AUC-ROC: 86.37. Result ID: 6a03359d47f34ce924e7f27b.

[Reporting paper](<https://www.sota2.com/research/paper/6a02b493dbc836b87d824d46.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa77d81e209131cea75842.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GCOPE

AUC-ROC: 84.99. Result ID: 6a03359d47f34ce924e7f278.

[Reporting paper](<https://www.sota2.com/research/paper/6a02b493dbc836b87d824d46.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa73b71e209131cea5e120.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### SAMGPT

AUC-ROC: 84.92. Result ID: 6a03359d47f34ce924e7f279.

[Reporting paper](<https://www.sota2.com/research/paper/6a02b493dbc836b87d824d46.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa77ea1e209131cea75faf.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### MDGFM

AUC-ROC: 84.78. Result ID: 6a03359d47f34ce924e7f27a.

[Reporting paper](<https://www.sota2.com/research/paper/6a02b493dbc836b87d824d46.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa78f21e209131cea7b61f.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### node2vec

AUC-ROC: 84.3. Result ID: 6a27c202fbc373592c242f91.

[Reporting paper](<https://www.sota2.com/research/paper/68fa77ae1e209131cea74ae8.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa62a01e209131ce9fa578.md>)

[Implementation](<http://snap.stanford.edu/node2vec>)

Recorded evaluation configuration: {"d":"128"}. This record does not assert independent reproduction.

### GraspLLM

AUC-ROC: 75.1. Result ID: 6a2a919cfbc373592c28881d.

[Reporting paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

[Method origin paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

Recorded evaluation configuration: {"Zero-shot":"true","Cross-task":"true","Backbone":"Qwen3-8B"}. This record does not assert independent reproduction.

### GraspLLM

AUC-ROC: 73.6. Result ID: 6a2a919cfbc373592c28881c.

[Reporting paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

[Method origin paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

Recorded evaluation configuration: {"Zero-shot":"true","Cross-task":"true","Backbone":"LLaMA-3.1-8B"}. This record does not assert independent reproduction.

### GraspLLM

AUC-ROC: 72.8. Result ID: 6a2a919cfbc373592c28881a.

[Reporting paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

[Method origin paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

Recorded evaluation configuration: {"Zero-shot":"true","Cross-task":"true","Backbone":"Vicuna-7B-v1.5"}. This record does not assert independent reproduction.

### GraspLLM

AUC-ROC: 71.1. Result ID: 6a2a919cfbc373592c28881b.

[Reporting paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

[Method origin paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

Recorded evaluation configuration: {"Zero-shot":"true","Cross-task":"true","Backbone":"Mistral-7B-v0.3"}. This record does not assert independent reproduction.

### TEA-GLM

AUC-ROC: 68.9. Result ID: 6a2a919cfbc373592c288819.

[Reporting paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa76461e209131cea6c167.md>)

Recorded evaluation configuration: {"Zero-shot":"true","Cross-task":"true"}. This record does not assert independent reproduction.

### LLaGA

AUC-ROC: 59.1. Result ID: 6a2a919cfbc373592c288818.

[Reporting paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa72dd1e209131cea5905c.md>)

Recorded evaluation configuration: {"Zero-shot":"true","Cross-task":"true"}. This record does not assert independent reproduction.

### Vicuna-7B-IT

AUC-ROC: 54.2. Result ID: 6a2a919cfbc373592c288813.

[Reporting paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

Recorded evaluation configuration: {"Zero-shot":"true","Cross-task":"true"}. This record does not assert independent reproduction.

### Vicuna-7B-v1.5

AUC-ROC: 53.5. Result ID: 6a2a919cfbc373592c288812.

[Reporting paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

Recorded evaluation configuration: {"Zero-shot":"true","Cross-task":"true"}. This record does not assert independent reproduction.

### ZeroG

AUC-ROC: 51.9. Result ID: 6a2a919cfbc373592c288815.

[Reporting paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa73e41e209131cea5eb71.md>)

Recorded evaluation configuration: {"Zero-shot":"true","Cross-task":"true"}. This record does not assert independent reproduction.

### GraphGPT

AUC-ROC: 51. Result ID: 6a2a919cfbc373592c288817.

[Reporting paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa73281e209131cea5ac5d.md>)

Recorded evaluation configuration: {"Zero-shot":"true","Cross-task":"true"}. This record does not assert independent reproduction.

### GraphCLIP

AUC-ROC: 50.1. Result ID: 6a2a919cfbc373592c288816.

[Reporting paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa771f1e209131cea713be.md>)

Recorded evaluation configuration: {"Zero-shot":"true","Cross-task":"true"}. This record does not assert independent reproduction.

### OFA

AUC-ROC: 49.2. Result ID: 6a2a919cfbc373592c288814.

[Reporting paper](<https://www.sota2.com/research/paper/6a2a4108d33dfb23e7839294.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa740f1e209131cea5f884.md>)

Recorded evaluation configuration: {"Zero-shot":"true","Cross-task":"true"}. This record does not assert independent reproduction.

Page 1 of 1. This is an index page, not the full collection.
