# Link Prediction on PubMed Attributed

Source: [Link Prediction on PubMed Attributed](<https://www.sota2.com/research/sota/link-prediction-on-pubmed-attributed>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-02-26T05:24:43.432Z

Evaluation of Link Prediction performance on the PubMed Attributed dataset, typically measured using AUC.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Link Prediction |
| Dataset (including any stated split) | PubMed Attributed |
| Metric | AUC |
| Unit | SCALAR |
| Direction | Higher is better |
| Results loaded | 18 of 18 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [AUC](<https://www.sota2.com/research/sota/link-prediction-on-pubmed-attributed.md?metric=AUC>): Higher is better; unit: SCALAR.

## Recorded results

| Method | AUC | Result date | Report paper |
| --- | --- | --- | --- |
| PoS+ | 0.99 | Not recorded | 68fa753c1e209131cea66a0b |
| PoS | 0.9897 | Not recorded | 68fa753c1e209131cea66a0b |
| WalkPool | 0.9836 | Not recorded | 68fa753c1e209131cea66a0b |
| GCN+DE | 0.9815 | Not recorded | 68fa753c1e209131cea66a0b |
| SEAL | 0.9782 | Not recorded | 68fa753c1e209131cea66a0b |
| SoP | 0.9591 | Not recorded | 68fa753c1e209131cea66a0b |
| GAE | 0.9453 | Not recorded | 68fa753c1e209131cea66a0b |
| GCN | 0.9272 | Not recorded | 68fa753c1e209131cea66a0b |
| VGAE | 0.9214 | Not recorded | 68fa753c1e209131cea66a0b |
| ARVGA | 0.921 | Not recorded | 68fa753c1e209131cea66a0b |
| GIC | 0.9104 | Not recorded | 68fa753c1e209131cea66a0b |
| GIN | 0.8249 | Not recorded | 68fa753c1e209131cea66a0b |
| GraphSAGE | 0.816 | Not recorded | 68fa753c1e209131cea66a0b |
| node2vec | 0.7998 | Not recorded | 68fa753c1e209131cea66a0b |
| PPR | 0.758 | Not recorded | 68fa753c1e209131cea66a0b |
| MF | 0.6856 | Not recorded | 68fa753c1e209131cea66a0b |
| AA | 0.6426 | Not recorded | 68fa753c1e209131cea66a0b |
| CN | 0.6426 | Not recorded | 68fa753c1e209131cea66a0b |

### PoS+

AUC: 0.99. Result ID: 699395ff3a6c314849170d1a.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Implementation](<https://github.com/venomouscyanide/S3GRL_OGB>)

Recorded evaluation configuration: {"Category":"S3GRL"}. This record does not assert independent reproduction.

### PoS

AUC: 0.9897. Result ID: 699395ff3a6c314849170d19.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Implementation](<https://github.com/venomouscyanide/S3GRL_OGB>)

Recorded evaluation configuration: {"Category":"S3GRL"}. This record does not assert independent reproduction.

### WalkPool

AUC: 0.9836. Result ID: 699395ff3a6c314849170d18.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6bfb1e209131cea31655.md>)

[Implementation](<https://github.com/DaDaCheng/WalkPooling>)

Recorded evaluation configuration: {"Category":"SGRL"}. This record does not assert independent reproduction.

### GCN+DE

AUC: 0.9815. Result ID: 699395ff3a6c314849170d17.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa689e1e209131cea1d234.md>)

Recorded evaluation configuration: {"Category":"SGRL"}. This record does not assert independent reproduction.

### SEAL

AUC: 0.9782. Result ID: 699395ff3a6c314849170d16.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa65131e209131cea0807d.md>)

[Implementation](<https://github.com/muhanzhang/SEAL>)

Recorded evaluation configuration: {"Category":"SGRL"}. This record does not assert independent reproduction.

### SoP

AUC: 0.9591. Result ID: 699395ff3a6c314849170d1b.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Implementation](<https://github.com/venomouscyanide/S3GRL_OGB>)

Recorded evaluation configuration: {"Category":"S3GRL"}. This record does not assert independent reproduction.

### GAE

AUC: 0.9453. Result ID: 699395ff3a6c314849170d12.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa63001e209131ce9fc365.md>)

Recorded evaluation configuration: {"Category":"AE"}. This record does not assert independent reproduction.

### GCN

AUC: 0.9272. Result ID: 699395ff3a6c314849170d0d.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa631d1e209131ce9fce45.md>)

[Implementation](<https://github.com/tkipf/gcn>)

Recorded evaluation configuration: {"Category":"MPGNN"}. This record does not assert independent reproduction.

### VGAE

AUC: 0.9214. Result ID: 699395ff3a6c314849170d13.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa63001e209131ce9fc365.md>)

Recorded evaluation configuration: {"Category":"AE"}. This record does not assert independent reproduction.

### ARVGA

AUC: 0.921. Result ID: 699395ff3a6c314849170d14.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa65371e209131cea0901b.md>)

Recorded evaluation configuration: {"Category":"AE"}. This record does not assert independent reproduction.

### GIC

AUC: 0.9104. Result ID: 699395ff3a6c314849170d15.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

Recorded evaluation configuration: {"Category":"AE"}. This record does not assert independent reproduction.

### GIN

AUC: 0.8249. Result ID: 699395ff3a6c314849170d0f.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa65651e209131cea09fba.md>)

[Implementation](<https://github.com/weihua916/powerful-gnns>)

Recorded evaluation configuration: {"Category":"MPGNN"}. This record does not assert independent reproduction.

### GraphSAGE

AUC: 0.816. Result ID: 699395ff3a6c314849170d0e.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa64c31e209131cea0664e.md>)

[Implementation](<http://snap.stanford.edu/graphsage/>)

Recorded evaluation configuration: {"Category":"MPGNN"}. This record does not assert independent reproduction.

### node2vec

AUC: 0.7998. Result ID: 699395ff3a6c314849170d10.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa62a01e209131ce9fa578.md>)

[Implementation](<http://snap.stanford.edu/node2vec>)

Recorded evaluation configuration: {"Category":"LF"}. This record does not assert independent reproduction.

### PPR

AUC: 0.758. Result ID: 699395ff3a6c314849170d0c.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

Recorded evaluation configuration: {"Category":"Heuristic"}. This record does not assert independent reproduction.

### MF

AUC: 0.6856. Result ID: 699395ff3a6c314849170d11.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

Recorded evaluation configuration: {"Category":"LF"}. This record does not assert independent reproduction.

### AA

AUC: 0.6426. Result ID: 699395ff3a6c314849170d0a.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

Recorded evaluation configuration: {"Category":"Heuristic"}. This record does not assert independent reproduction.

### CN

AUC: 0.6426. Result ID: 699395ff3a6c314849170d0b.

[Reporting paper](<https://www.sota2.com/research/paper/68fa753c1e209131cea66a0b.md>)

Recorded evaluation configuration: {"Category":"Heuristic"}. This record does not assert independent reproduction.

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