# Link Prediction on PCQM-Contact LRGB (test)

Source: [Link Prediction on PCQM-Contact LRGB (test)](<https://www.sota2.com/research/sota/link-prediction-on-pcqm-contact-lrgb-test>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-02-26T05:50:26.121Z

Evaluation of Link Prediction performance on the test split of the PCQM-Contact LRGB dataset, measured using metrics like MRR.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Link Prediction |
| Dataset (including any stated split) | PCQM-Contact LRGB (test) |
| Metric | MRR |
| Unit | SCALAR |
| Direction | Higher is better |
| Results loaded | 39 of 39 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [MRR](<https://www.sota2.com/research/sota/link-prediction-on-pcqm-contact-lrgb-test.md?metric=MRR>): Higher is better; unit: SCALAR.

- [MRR (PCQM(1))](<https://www.sota2.com/research/sota/link-prediction-on-pcqm-contact-lrgb-test.md?metric=MRR%20(PCQM(1))>): Higher is better; unit: SCALAR.

- [MRR (PCQM(2))](<https://www.sota2.com/research/sota/link-prediction-on-pcqm-contact-lrgb-test.md?metric=MRR%20(PCQM(2))>): Higher is better; unit: SCALAR.

- [MRR (PCQM(3))](<https://www.sota2.com/research/sota/link-prediction-on-pcqm-contact-lrgb-test.md?metric=MRR%20(PCQM(3))>): Higher is better; unit: SCALAR.

## Recorded results

| Method | MRR | Result date | Report paper |
| --- | --- | --- | --- |
| NeuralWalker | 0.4707 | Not recorded | 68fa75121e209131cea65812 |
| GPS | 0.4703 | Not recorded | 68fa75121e209131cea65812 |
| GatedGCN | 0.467 | Not recorded | 68fa75121e209131cea65812 |
| GIN | 0.4617 | Not recorded | 68fa75121e209131cea65812 |
| GCN | 0.4526 | Not recorded | 68fa75121e209131cea65812 |
| Exphormer | 0.3637 | Not recorded | 68fa701b1e209131cea49080 |
| GPS+EdgeRWSE | 0.3408 | Not recorded | 68fa71051e209131cea4ea30 |
| GPS+Hodge1Lap | 0.3407 | Not recorded | 68fa71051e209131cea4ea30 |
| SAN | 0.335 | Not recorded | 68fa6e5a1e209131cea3f4dc |
| SAN+LapPE | 0.335 | Not recorded | 68fa701b1e209131cea49080 |
| SAN+LapPE | 0.335 | Not recorded | 68fa71051e209131cea4ea30 |
| SAN+RWSE | 0.335 | Not recorded | 68fa71051e209131cea4ea30 |
| GatedGCN+EdgeRWSE | 0.3342 | Not recorded | 68fa71051e209131cea4ea30 |
| SAN | 0.3341 | Not recorded | 68fa6e5a1e209131cea3f4dc |
| SAN+RWSE | 0.3341 | Not recorded | 68fa701b1e209131cea49080 |
| GPS | 0.3337 | Not recorded | 68fa6e5a1e209131cea3f4dc |
| GraphGPS | 0.3337 | Not recorded | 68fa701b1e209131cea49080 |
| GPS | 0.3337 | Not recorded | 68fa71051e209131cea4ea30 |
| GatedGCN+Hodge1Lap | 0.3336 | Not recorded | 68fa71051e209131cea4ea30 |
| GatedGCN | 0.3242 | Not recorded | 68fa6e5a1e209131cea3f4dc |
| GatedGCN+RWSE | 0.3242 | Not recorded | 68fa701b1e209131cea49080 |
| GCN | 0.3234 | Not recorded | 68fa6e5a1e209131cea3f4dc |
| GCN | 0.3234 | Not recorded | 68fa701b1e209131cea49080 |
| GCN | 0.3234 | Not recorded | 68fa71051e209131cea4ea30 |
| GatedGCN | 0.3218 | Not recorded | 68fa6e5a1e209131cea3f4dc |
| GatedGCN | 0.3218 | Not recorded | 68fa701b1e209131cea49080 |
| GatedGCN | 0.3218 | Not recorded | 68fa71051e209131cea4ea30 |
| GINE | 0.318 | Not recorded | 68fa6e5a1e209131cea3f4dc |
| GINE | 0.318 | Not recorded | 68fa701b1e209131cea49080 |
| GINE | 0.318 | Not recorded | 68fa71051e209131cea4ea30 |
| Transformer | 0.3174 | Not recorded | 68fa6e5a1e209131cea3f4dc |
| Transformer+LapPE | 0.3174 | Not recorded | 68fa701b1e209131cea49080 |
| Transformer+LapPE | 0.3174 | Not recorded | 68fa71051e209131cea4ea30 |

### NeuralWalker

MRR: 0.4707. Result ID: 69938be63a6c31484916c1d7.

[Reporting paper](<https://www.sota2.com/research/paper/68fa75121e209131cea65812.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa75121e209131cea65812.md>)

[Implementation](<https://github.com/BorgwardtLab/NeuralWalker>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GPS

MRR: 0.4703. Result ID: 69938be63a6c31484916c1d6.

[Reporting paper](<https://www.sota2.com/research/paper/68fa75121e209131cea65812.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Implementation](<https://github.com/rampasek/GraphGPS>)

Recorded evaluation configuration: {"Reference":"\[47\]"}. This record does not assert independent reproduction.

### GatedGCN

MRR: 0.467. Result ID: 69938be63a6c31484916c1d5.

[Reporting paper](<https://www.sota2.com/research/paper/68fa75121e209131cea65812.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa64421e209131cea038ba.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GIN

MRR: 0.4617. Result ID: 69938be63a6c31484916c1d4.

[Reporting paper](<https://www.sota2.com/research/paper/68fa75121e209131cea65812.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa65651e209131cea09fba.md>)

[Implementation](<https://github.com/weihua916/powerful-gnns>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GCN

MRR: 0.4526. Result ID: 69938be63a6c31484916c1d3.

[Reporting paper](<https://www.sota2.com/research/paper/68fa75121e209131cea65812.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa631d1e209131ce9fce45.md>)

[Implementation](<https://github.com/tkipf/gcn>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### Exphormer

MRR: 0.3637. Result ID: 69911a823a6c31484905b6af.

[Reporting paper](<https://www.sota2.com/research/paper/68fa701b1e209131cea49080.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa701b1e209131cea49080.md>)

[Implementation](<https://github.com/hamed1375/Exphormer>)

Recorded evaluation configuration: {"Backbone":"Exphormer"}. This record does not assert independent reproduction.

### GPS+EdgeRWSE

MRR: 0.3408. Result ID: 69918b603a6c31484908df83.

[Reporting paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Implementation](<https://github.com/zhouc20/HodgeRandomWalk>)

Recorded evaluation configuration: {"Augmentation":"EdgeRWSE"}. This record does not assert independent reproduction.

### GPS+Hodge1Lap

MRR: 0.3407. Result ID: 69918b603a6c31484908df84.

[Reporting paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Implementation](<https://github.com/zhouc20/HodgeRandomWalk>)

Recorded evaluation configuration: {"Augmentation":"Hodge1Lap"}. This record does not assert independent reproduction.

### SAN

MRR: 0.335. Result ID: 699015233a6c314849fdffd8.

[Reporting paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6b161e209131cea2c0e4.md>)

[Implementation](<https://github.com/DevinKreuzer/SAN>)

Recorded evaluation configuration: {"positional\_encoding":"LapPE"}. This record does not assert independent reproduction.

### SAN+LapPE

MRR: 0.335. Result ID: 69911a823a6c31484905b6ac.

[Reporting paper](<https://www.sota2.com/research/paper/68fa701b1e209131cea49080.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa714c1e209131cea508ac.md>)

[Implementation](<https://github.com/vijaydwivedi75/lrgb>)

Recorded evaluation configuration: {"Backbone":"SAN","Positional Encoding":"LapPE"}. This record does not assert independent reproduction.

### SAN+LapPE

MRR: 0.335. Result ID: 69918b603a6c31484908df7e.

[Reporting paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6b161e209131cea2c0e4.md>)

[Implementation](<https://github.com/DevinKreuzer/SAN>)

Recorded evaluation configuration: {"PE/SE":"LapPE"}. This record does not assert independent reproduction.

### SAN+RWSE

MRR: 0.335. Result ID: 69918b603a6c31484908df7f.

[Reporting paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Implementation](<https://github.com/rampasek/GraphGPS>)

Recorded evaluation configuration: {"PE/SE":"RWSE"}. This record does not assert independent reproduction.

### GatedGCN+EdgeRWSE

MRR: 0.3342. Result ID: 69918b603a6c31484908df81.

[Reporting paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Implementation](<https://github.com/zhouc20/HodgeRandomWalk>)

Recorded evaluation configuration: {"Augmentation":"EdgeRWSE"}. This record does not assert independent reproduction.

### SAN

MRR: 0.3341. Result ID: 699015233a6c314849fdffd9.

[Reporting paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6b161e209131cea2c0e4.md>)

[Implementation](<https://github.com/DevinKreuzer/SAN>)

Recorded evaluation configuration: {"structural\_encoding":"RWSE"}. This record does not assert independent reproduction.

### SAN+RWSE

MRR: 0.3341. Result ID: 69911a823a6c31484905b6ad.

[Reporting paper](<https://www.sota2.com/research/paper/68fa701b1e209131cea49080.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa714c1e209131cea508ac.md>)

[Implementation](<https://github.com/vijaydwivedi75/lrgb>)

Recorded evaluation configuration: {"Backbone":"SAN","Positional Encoding":"RWSE"}. This record does not assert independent reproduction.

### GPS

MRR: 0.3337. Result ID: 699015233a6c314849fdffda.

[Reporting paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Implementation](<https://github.com/rampasek/GraphGPS>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GraphGPS

MRR: 0.3337. Result ID: 69911a823a6c31484905b6ae.

[Reporting paper](<https://www.sota2.com/research/paper/68fa701b1e209131cea49080.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Implementation](<https://github.com/rampasek/GraphGPS>)

Recorded evaluation configuration: {"Backbone":"GraphGPS"}. This record does not assert independent reproduction.

### GPS

MRR: 0.3337. Result ID: 69918b603a6c31484908df80.

[Reporting paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Implementation](<https://github.com/rampasek/GraphGPS>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GatedGCN+Hodge1Lap

MRR: 0.3336. Result ID: 69918b603a6c31484908df82.

[Reporting paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Implementation](<https://github.com/zhouc20/HodgeRandomWalk>)

Recorded evaluation configuration: {"Augmentation":"Hodge1Lap"}. This record does not assert independent reproduction.

### GatedGCN

MRR: 0.3242. Result ID: 699015233a6c314849fdffd6.

[Reporting paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa64421e209131cea038ba.md>)

Recorded evaluation configuration: {"structural\_encoding":"RWSE"}. This record does not assert independent reproduction.

### GatedGCN+RWSE

MRR: 0.3242. Result ID: 69911a823a6c31484905b6aa.

[Reporting paper](<https://www.sota2.com/research/paper/68fa701b1e209131cea49080.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa714c1e209131cea508ac.md>)

[Implementation](<https://github.com/vijaydwivedi75/lrgb>)

Recorded evaluation configuration: {"Backbone":"GatedGCN","Positional Encoding":"RWSE"}. This record does not assert independent reproduction.

### GCN

MRR: 0.3234. Result ID: 699015233a6c314849fdffd3.

[Reporting paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa631d1e209131ce9fce45.md>)

[Implementation](<https://github.com/tkipf/gcn>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GCN

MRR: 0.3234. Result ID: 69911a823a6c31484905b6a7.

[Reporting paper](<https://www.sota2.com/research/paper/68fa701b1e209131cea49080.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa631d1e209131ce9fce45.md>)

[Implementation](<https://github.com/tkipf/gcn>)

Recorded evaluation configuration: {"Backbone":"GCN"}. This record does not assert independent reproduction.

### GCN

MRR: 0.3234. Result ID: 69918b603a6c31484908df7a.

[Reporting paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa631d1e209131ce9fce45.md>)

[Implementation](<https://github.com/tkipf/gcn>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GatedGCN

MRR: 0.3218. Result ID: 699015233a6c314849fdffd5.

[Reporting paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa64421e209131cea038ba.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GatedGCN

MRR: 0.3218. Result ID: 69911a823a6c31484905b6a9.

[Reporting paper](<https://www.sota2.com/research/paper/68fa701b1e209131cea49080.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa64421e209131cea038ba.md>)

Recorded evaluation configuration: {"Backbone":"GatedGCN"}. This record does not assert independent reproduction.

### GatedGCN

MRR: 0.3218. Result ID: 69918b603a6c31484908df7c.

[Reporting paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa64421e209131cea038ba.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GINE

MRR: 0.318. Result ID: 699015233a6c314849fdffd4.

[Reporting paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa671b1e209131cea14492.md>)

[Implementation](<http://snap.stanford.edu/gnn-pretrain>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### GINE

MRR: 0.318. Result ID: 69911a823a6c31484905b6a8.

[Reporting paper](<https://www.sota2.com/research/paper/68fa701b1e209131cea49080.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa714c1e209131cea508ac.md>)

[Implementation](<https://github.com/vijaydwivedi75/lrgb>)

Recorded evaluation configuration: {"Backbone":"GINE"}. This record does not assert independent reproduction.

### GINE

MRR: 0.318. Result ID: 69918b603a6c31484908df7b.

[Reporting paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Implementation](<https://github.com/rampasek/GraphGPS>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### Transformer

MRR: 0.3174. Result ID: 699015233a6c314849fdffd7.

[Reporting paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa703d1e209131cea49db1.md>)

[Implementation](<https://github.com/tensorflow/tensor2tensor>)

Recorded evaluation configuration: {"positional\_encoding":"LapPE"}. This record does not assert independent reproduction.

### Transformer+LapPE

MRR: 0.3174. Result ID: 69911a823a6c31484905b6ab.

[Reporting paper](<https://www.sota2.com/research/paper/68fa701b1e209131cea49080.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa714c1e209131cea508ac.md>)

[Implementation](<https://github.com/vijaydwivedi75/lrgb>)

Recorded evaluation configuration: {"Backbone":"Transformer","Positional Encoding":"LapPE"}. This record does not assert independent reproduction.

### Transformer+LapPE

MRR: 0.3174. Result ID: 69918b603a6c31484908df7d.

[Reporting paper](<https://www.sota2.com/research/paper/68fa71051e209131cea4ea30.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6e5a1e209131cea3f4dc.md>)

[Implementation](<https://github.com/rampasek/GraphGPS>)

Recorded evaluation configuration: {"PE/SE":"LapPE"}. This record does not assert independent reproduction.

Page 1 of 1. This is an index page, not the full collection.