# Link Prediction on Gene Ontology (GO) 10% normalized biomedical ontologies (test)

Source: [Link Prediction on Gene Ontology (GO) 10% normalized biomedical ontologies (test)](<https://www.sota2.com/research/sota/link-prediction-on-gene-ontology-go-10-percent-normalized-biomedical-ontologies-test>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-04-15T07:12:08.816Z

Evaluation of Link Prediction performance on the test split of the 10% normalized Gene Ontology biomedical dataset.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Link Prediction |
| Dataset (including any stated split) | Gene Ontology (GO) 10% normalized biomedical ontologies (test) |
| Metric | F1 Score |
| Unit | PERCENT |
| Direction | Higher is better |
| Results loaded | 10 of 10 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [F1 Score](<https://www.sota2.com/research/sota/link-prediction-on-gene-ontology-go-10-percent-normalized-biomedical-ontologies-test.md?metric=F1%20Score>): Higher is better; unit: PERCENT.

## Recorded results

| Method | F1 Score | Result date | Report paper |
| --- | --- | --- | --- |
| ELEM + RegD | 61.4 | Not recorded | 68fa7bf31e209131cea8b85b |
| ELEM + RegD | 60.3 | Not recorded | 68fa7bf31e209131cea8b85b |
| ELEM | 54.5 | Not recorded | 68fa7bf31e209131cea8b85b |
| ELEM | 54.2 | Not recorded | 68fa7bf31e209131cea8b85b |
| ELBE + RegD | 44.1 | Not recorded | 68fa7bf31e209131cea8b85b |
| ELBE | 37.9 | Not recorded | 68fa7bf31e209131cea8b85b |
| ELBE + RegD | 37.1 | Not recorded | 68fa7bf31e209131cea8b85b |
| ELBE | 32.8 | Not recorded | 68fa7bf31e209131cea8b85b |
| ELBE + τBox | 29.3 | Not recorded | 68fa7bf31e209131cea8b85b |
| ELBE + τBox | 24 | Not recorded | 68fa7bf31e209131cea8b85b |

### ELEM + RegD

F1 Score: 61.4. Result ID: 69df392e47f34ce924c7867c.

[Reporting paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

Recorded evaluation configuration: {"Embedding Dimension (d)":"10"}. This record does not assert independent reproduction.

### ELEM + RegD

F1 Score: 60.3. Result ID: 69df392e47f34ce924c7867b.

[Reporting paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

Recorded evaluation configuration: {"Embedding Dimension (d)":"5"}. This record does not assert independent reproduction.

### ELEM

F1 Score: 54.5. Result ID: 69df392e47f34ce924c78679.

[Reporting paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa65681e209131cea0a177.md>)

Recorded evaluation configuration: {"Embedding Dimension (d)":"5"}. This record does not assert independent reproduction.

### ELEM

F1 Score: 54.2. Result ID: 69df392e47f34ce924c7867a.

[Reporting paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa65681e209131cea0a177.md>)

Recorded evaluation configuration: {"Embedding Dimension (d)":"10"}. This record does not assert independent reproduction.

### ELBE + RegD

F1 Score: 44.1. Result ID: 69df392e47f34ce924c78678.

[Reporting paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

Recorded evaluation configuration: {"Embedding Dimension (d)":"10"}. This record does not assert independent reproduction.

### ELBE

F1 Score: 37.9. Result ID: 69df392e47f34ce924c78674.

[Reporting paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6bde1e209131cea30ba9.md>)

Recorded evaluation configuration: {"Embedding Dimension (d)":"10"}. This record does not assert independent reproduction.

### ELBE + RegD

F1 Score: 37.1. Result ID: 69df392e47f34ce924c78677.

[Reporting paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

Recorded evaluation configuration: {"Embedding Dimension (d)":"5"}. This record does not assert independent reproduction.

### ELBE

F1 Score: 32.8. Result ID: 69df392e47f34ce924c78673.

[Reporting paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6bde1e209131cea30ba9.md>)

Recorded evaluation configuration: {"Embedding Dimension (d)":"5"}. This record does not assert independent reproduction.

### ELBE + τBox

F1 Score: 29.3. Result ID: 69df392e47f34ce924c78676.

[Reporting paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

Recorded evaluation configuration: {"Embedding Dimension (d)":"10"}. This record does not assert independent reproduction.

### ELBE + τBox

F1 Score: 24. Result ID: 69df392e47f34ce924c78675.

[Reporting paper](<https://www.sota2.com/research/paper/68fa7bf31e209131cea8b85b.md>)

Recorded evaluation configuration: {"Embedding Dimension (d)":"5"}. This record does not assert independent reproduction.

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