# Gene Regulatory Network Inference on SIM350 5% noise (test) Source: [Gene Regulatory Network Inference on SIM350 5% noise (test)]() Collection index: [llms.txt]() Data updated: 2026-02-26T06:04:31.614Z Evaluation of models for inferring gene regulatory networks using the SIM350 dataset variant containing 5% noise, assessed using metrics like Sparsity and Balanced Accuracy. A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage. | Scope | Recorded value | | --- | --- | | Task | Gene regulatory network inference | | Dataset (including any stated split) | SIM350 5% noise (test) | | Metric | Sparsity | | Unit | PERCENT | | Direction | Higher is better | | Results loaded | 12 of 12 | | Coverage | All results currently returned for this benchmark | Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol. ## Metrics - [Sparsity](): Higher is better; unit: PERCENT. - [Balanced Accuracy](): Higher is better; unit: PERCENT. ## Recorded results | Method | Sparsity | Result date | Report paper | | --- | --- | --- | --- | | SparseFlow | 96 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | DASH | 94.6 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | DST | 92.8 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | PINN + MP | 87 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | BioPrune | 83.5 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | IMP | 81.9 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | Iter. SynFlow | 79.3 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | PathReg | 56.5 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | L0 | 33.8 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | PINN | 9.9 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | None/Baseline | 7.5 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | C-NODE | 6.2 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | ### SparseFlow Sparsity: 96. Result ID: 698bc6fd7a967eddb7714681. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"Strategy category":"Pruning-based (explicit)","Prior-informed":false}. This record does not assert independent reproduction. ### DASH Sparsity: 94.6. Result ID: 698bc6fd7a967eddb7714683. [Reporting paper]() [Method origin paper]() [Implementation]() Recorded evaluation configuration: {"Strategy category":"Pruning-based (explicit)","Prior-informed":true}. This record does not assert independent reproduction. ### DST Sparsity: 92.8. Result ID: 698bc6fd7a967eddb771467e. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"Strategy category":"Penalty-based (implicit)","Prior-informed":false}. This record does not assert independent reproduction. ### PINN + MP Sparsity: 87. Result ID: 698bc6fd7a967eddb7714684. [Reporting paper]() [Method origin paper]() [Implementation]() Recorded evaluation configuration: {"Strategy category":"Hybrid","Prior-informed":true}. This record does not assert independent reproduction. ### BioPrune Sparsity: 83.5. Result ID: 698bc6fd7a967eddb7714682. [Reporting paper]() [Method origin paper]() [Implementation]() Recorded evaluation configuration: {"Strategy category":"Pruning-based (explicit)","Prior-informed":true}. This record does not assert independent reproduction. ### IMP Sparsity: 81.9. Result ID: 698bc6fd7a967eddb771467f. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"Strategy category":"Pruning-based (explicit)","Prior-informed":false}. This record does not assert independent reproduction. ### Iter. SynFlow Sparsity: 79.3. Result ID: 698bc6fd7a967eddb7714680. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"Strategy category":"Pruning-based (explicit)","Prior-informed":false}. This record does not assert independent reproduction. ### PathReg Sparsity: 56.5. Result ID: 698bc6fd7a967eddb771467c. [Reporting paper]() [Method origin paper]() [Implementation]() Recorded evaluation configuration: {"Strategy category":"Penalty-based (implicit)","Prior-informed":false}. This record does not assert independent reproduction. ### L0 Sparsity: 33.8. Result ID: 698bc6fd7a967eddb771467a. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"Strategy category":"Penalty-based (implicit)","Prior-informed":false}. This record does not assert independent reproduction. ### PINN Sparsity: 9.9. Result ID: 698bc6fd7a967eddb771467d. [Reporting paper]() Recorded evaluation configuration: {"Strategy category":"Penalty-based (implicit)","Prior-informed":true}. This record does not assert independent reproduction. ### None/Baseline Sparsity: 7.5. Result ID: 698bc6fd7a967eddb7714679. [Reporting paper]() Recorded evaluation configuration: {"Strategy category":"None","Prior-informed":false}. This record does not assert independent reproduction. ### C-NODE Sparsity: 6.2. Result ID: 698bc6fd7a967eddb771467b. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"Strategy category":"Penalty-based (implicit)","Prior-informed":false}. This record does not assert independent reproduction. Page 1 of 1. This is an index page, not the full collection.