# Gene regulatory dynamics prediction on SIM350 5% noise (test) Source: [Gene regulatory dynamics prediction on SIM350 5% noise (test)]() Collection index: [llms.txt]() Data updated: 2026-02-26T05:50:35.497Z Evaluation of models predicting gene regulatory dynamics using the SIM350 dataset, specifically the 5% noise test split. A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage. | Scope | Recorded value | | --- | --- | | Task | Gene regulatory dynamics prediction | | Dataset (including any stated split) | SIM350 5% noise (test) | | Metric | MSE | | Unit | SCALAR | | Direction | Lower is better | | Results loaded | 12 of 12 | | Coverage | All results currently returned for this benchmark | Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol. ## Metrics - [MSE](): Lower is better; unit: SCALAR. ## Recorded results | Method | MSE | Result date | Report paper | | --- | --- | --- | --- | | PINN + MP | 2.3 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | DASH | 2.4 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | PINN | 2.5 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | BioPrune | 2.6 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | C-NODE | 2.8 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | None/Baseline | 3 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | SparseFlow | 3.6 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | DST | 4 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | IMP | 4.7 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | Iter. SynFlow | 7 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | PathReg | 8 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | | L0 | 8.5 | Not recorded | 68fa5f6e1e209131ce9e9cf7 | ### PINN + MP MSE: 2.3. Result ID: 698bc6fd7a967eddb7714690. [Reporting paper]() [Method origin paper]() [Implementation]() Recorded evaluation configuration: {"Strategy category":"Hybrid","Prior-informed":true}. This record does not assert independent reproduction. ### DASH MSE: 2.4. Result ID: 698bc6fd7a967eddb771468f. [Reporting paper]() [Method origin paper]() [Implementation]() Recorded evaluation configuration: {"Strategy category":"Pruning-based (explicit)","Prior-informed":true}. This record does not assert independent reproduction. ### PINN MSE: 2.5. Result ID: 698bc6fd7a967eddb7714689. [Reporting paper]() Recorded evaluation configuration: {"Strategy category":"Penalty-based (implicit)","Prior-informed":true}. This record does not assert independent reproduction. ### BioPrune MSE: 2.6. Result ID: 698bc6fd7a967eddb771468e. [Reporting paper]() [Method origin paper]() [Implementation]() Recorded evaluation configuration: {"Strategy category":"Pruning-based (explicit)","Prior-informed":true}. This record does not assert independent reproduction. ### C-NODE MSE: 2.8. Result ID: 698bc6fd7a967eddb7714687. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"Strategy category":"Penalty-based (implicit)","Prior-informed":false}. This record does not assert independent reproduction. ### None/Baseline MSE: 3. Result ID: 698bc6fd7a967eddb7714685. [Reporting paper]() Recorded evaluation configuration: {"Strategy category":"None","Prior-informed":false}. This record does not assert independent reproduction. ### SparseFlow MSE: 3.6. Result ID: 698bc6fd7a967eddb771468d. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"Strategy category":"Pruning-based (explicit)","Prior-informed":false}. This record does not assert independent reproduction. ### DST MSE: 4. Result ID: 698bc6fd7a967eddb771468a. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"Strategy category":"Penalty-based (implicit)","Prior-informed":false}. This record does not assert independent reproduction. ### IMP MSE: 4.7. Result ID: 698bc6fd7a967eddb771468b. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"Strategy category":"Pruning-based (explicit)","Prior-informed":false}. This record does not assert independent reproduction. ### Iter. SynFlow MSE: 7. Result ID: 698bc6fd7a967eddb771468c. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"Strategy category":"Pruning-based (explicit)","Prior-informed":false}. This record does not assert independent reproduction. ### PathReg MSE: 8. Result ID: 698bc6fd7a967eddb7714688. [Reporting paper]() [Method origin paper]() [Implementation]() Recorded evaluation configuration: {"Strategy category":"Penalty-based (implicit)","Prior-informed":false}. This record does not assert independent reproduction. ### L0 MSE: 8.5. Result ID: 698bc6fd7a967eddb7714686. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"Strategy category":"Penalty-based (implicit)","Prior-informed":false}. This record does not assert independent reproduction. Page 1 of 1. This is an index page, not the full collection.