# Gene Expression Prediction on HER2 Source: [Gene Expression Prediction on HER2]() Collection index: [llms.txt]() Data updated: 2026-05-15T07:41:06.049Z Evaluation of models performing gene expression prediction using the HER2 dataset, assessed using regression metrics like MSE, MAE, and PCC. A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage. | Scope | Recorded value | | --- | --- | | Task | Gene expression prediction | | Dataset (including any stated split) | HER2 | | Metric | MSE | | Unit | SCALAR | | Direction | Lower is better | | Results loaded | 32 of 32 | | Coverage | All results currently returned for this benchmark | Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol. ## Metrics - [MSE](): Lower is better; unit: SCALAR. - [MAE](): Lower is better; unit: SCALAR. - [PCC](): Higher is better; unit: SCALAR. ## Recorded results | Method | MSE | Result date | Report paper | | --- | --- | --- | --- | | DUET | 0.5248 | Not recorded | 6a06a89bdbc836b87d82a087 | | DUET | 0.5297 | Not recorded | 6a06a89bdbc836b87d82a087 | | OmiCLIP | 0.554 | Not recorded | 6a06a89bdbc836b87d82a087 | | OmiCLIP | 0.5672 | Not recorded | 6a06a89bdbc836b87d82a087 | | DUET | 0.5726 | Not recorded | 6a06a89bdbc836b87d82a087 | | UMPIRE | 0.5745 | Not recorded | 6a06a89bdbc836b87d82a087 | | UMPIRE | 0.5802 | Not recorded | 6a06a89bdbc836b87d82a087 | | UMPIRE | 0.5838 | Not recorded | 6a06a89bdbc836b87d82a087 | | EGN | 0.5866 | Not recorded | 6a06a89bdbc836b87d82a087 | | OmiCLIP | 0.6033 | Not recorded | 6a06a89bdbc836b87d82a087 | | ST-Net | 0.6083 | Not recorded | 6a06a89bdbc836b87d82a087 | | ST-Net | 0.6201 | Not recorded | 6a06a89bdbc836b87d82a087 | | BLEEP | 0.6311 | Not recorded | 6a06a89bdbc836b87d82a087 | | BLEEP | 0.6335 | Not recorded | 6a06a89bdbc836b87d82a087 | | His2ST | 0.6345 | Not recorded | 6a06a89bdbc836b87d82a087 | | His2ST | 0.6359 | Not recorded | 6a06a89bdbc836b87d82a087 | | mclSTExp | 0.6416 | Not recorded | 6a06a89bdbc836b87d82a087 | | mclSTExp | 0.6467 | Not recorded | 6a06a89bdbc836b87d82a087 | | ST-Net | 0.6485 | Not recorded | 6a06a89bdbc836b87d82a087 | | EGN | 0.6519 | Not recorded | 6a06a89bdbc836b87d82a087 | | His2ST | 0.6533 | Not recorded | 6a06a89bdbc836b87d82a087 | | mclSTExp | 0.6661 | Not recorded | 6a06a89bdbc836b87d82a087 | | EGN | 0.6771 | Not recorded | 6a06a89bdbc836b87d82a087 | | BLEEP | 0.681 | Not recorded | 6a06a89bdbc836b87d82a087 | | mc1STExp | 0.8882 | Not recorded | 6940e7e3456146936284fcc1 | | EGN | 0.8916 | Not recorded | 6940e7e3456146936284fcc1 | | SCR2Net | 0.9139 | Not recorded | 6940e7e3456146936284fcc1 | | ST-Net | 0.9237 | Not recorded | 6940e7e3456146936284fcc1 | | TRIPLEX | 0.9356 | Not recorded | 6940e7e3456146936284fcc1 | | BLEEP | 0.9507 | Not recorded | 6940e7e3456146936284fcc1 | | HisToGene | 0.9702 | Not recorded | 6940e7e3456146936284fcc1 | | His2ST | 0.9928 | Not recorded | 6940e7e3456146936284fcc1 | ### DUET MSE: 0.5248. Result ID: 6a06ce0647f34ce924ee1d14. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### DUET MSE: 0.5297. Result ID: 6a06ce0647f34ce924ee1d0c. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### OmiCLIP MSE: 0.554. Result ID: 6a06ce0647f34ce924ee1d12. [Reporting paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### OmiCLIP MSE: 0.5672. Result ID: 6a06ce0647f34ce924ee1d0a. [Reporting paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### DUET MSE: 0.5726. Result ID: 6a06ce0647f34ce924ee1d04. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### UMPIRE MSE: 0.5745. Result ID: 6a06ce0647f34ce924ee1d13. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### UMPIRE MSE: 0.5802. Result ID: 6a06ce0647f34ce924ee1d03. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### UMPIRE MSE: 0.5838. Result ID: 6a06ce0647f34ce924ee1d0b. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### EGN MSE: 0.5866. Result ID: 6a06ce0647f34ce924ee1cff. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### OmiCLIP MSE: 0.6033. Result ID: 6a06ce0647f34ce924ee1d02. [Reporting paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### ST-Net MSE: 0.6083. Result ID: 6a06ce0647f34ce924ee1cfd. [Reporting paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### ST-Net MSE: 0.6201. Result ID: 6a06ce0647f34ce924ee1d05. [Reporting paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### BLEEP MSE: 0.6311. Result ID: 6a06ce0647f34ce924ee1d08. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### BLEEP MSE: 0.6335. Result ID: 6a06ce0647f34ce924ee1d10. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### His2ST MSE: 0.6345. Result ID: 6a06ce0647f34ce924ee1d06. [Reporting paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### His2ST MSE: 0.6359. Result ID: 6a06ce0647f34ce924ee1d0e. [Reporting paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### mclSTExp MSE: 0.6416. Result ID: 6a06ce0647f34ce924ee1d11. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### mclSTExp MSE: 0.6467. Result ID: 6a06ce0647f34ce924ee1d01. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### ST-Net MSE: 0.6485. Result ID: 6a06ce0647f34ce924ee1d0d. [Reporting paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### EGN MSE: 0.6519. Result ID: 6a06ce0647f34ce924ee1d0f. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### His2ST MSE: 0.6533. Result ID: 6a06ce0647f34ce924ee1cfe. [Reporting paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### mclSTExp MSE: 0.6661. Result ID: 6a06ce0647f34ce924ee1d09. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### EGN MSE: 0.6771. Result ID: 6a06ce0647f34ce924ee1d07. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### BLEEP MSE: 0.681. Result ID: 6a06ce0647f34ce924ee1d00. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### mc1STExp MSE: 0.8882. Result ID: 699845185698665ec4a1c358. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### EGN MSE: 0.8916. Result ID: 699845185698665ec4a1c355. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### SCR2Net MSE: 0.9139. Result ID: 699845185698665ec4a1c359. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### ST-Net MSE: 0.9237. Result ID: 699845185698665ec4a1c352. [Reporting paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### TRIPLEX MSE: 0.9356. Result ID: 699845185698665ec4a1c356. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### BLEEP MSE: 0.9507. Result ID: 699845185698665ec4a1c357. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### HisToGene MSE: 0.9702. Result ID: 699845185698665ec4a1c354. [Reporting paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### His2ST MSE: 0.9928. Result ID: 699845185698665ec4a1c353. [Reporting paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. Page 1 of 1. This is an index page, not the full collection.