# Gene Expression Prediction on Breast Cancer Source: [Gene Expression Prediction on Breast Cancer]() Collection index: [llms.txt]() Data updated: 2026-05-15T07:41:06.011Z Evaluation of models performing gene expression prediction using the Breast Cancer dataset, typically assessed using regression metrics like MSE, MAE, and PCC. A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage. | Scope | Recorded value | | --- | --- | | Task | Gene expression prediction | | Dataset (including any stated split) | Breast Cancer | | Metric | MSE | | Unit | SCALAR | | Direction | Lower is better | | Results loaded | 32 of 32 | | Coverage | All results currently returned for this benchmark | Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol. ## Metrics - [MSE](): Lower is better; unit: SCALAR. - [MAE](): Lower is better; unit: SCALAR. - [PCC](): Higher is better; unit: SCALAR. ## Recorded results | Method | MSE | Result date | Report paper | | --- | --- | --- | --- | | DUET | 0.2886 | Not recorded | 6a06a89bdbc836b87d82a087 | | DUET | 0.2959 | Not recorded | 6a06a89bdbc836b87d82a087 | | DUET | 0.3095 | Not recorded | 6a06a89bdbc836b87d82a087 | | BLEEP | 0.3539 | Not recorded | 6a06a89bdbc836b87d82a087 | | BLEEP | 0.3593 | Not recorded | 6a06a89bdbc836b87d82a087 | | BLEEP | 0.3738 | Not recorded | 6a06a89bdbc836b87d82a087 | | OmiCLIP | 0.3903 | Not recorded | 6a06a89bdbc836b87d82a087 | | OmiCLIP | 0.3945 | Not recorded | 6a06a89bdbc836b87d82a087 | | OmiCLIP | 0.4007 | Not recorded | 6a06a89bdbc836b87d82a087 | | mclSTExp | 0.4073 | Not recorded | 6a06a89bdbc836b87d82a087 | | ST-Net | 0.4126 | Not recorded | 6a06a89bdbc836b87d82a087 | | EGN | 0.4164 | Not recorded | 6a06a89bdbc836b87d82a087 | | UMPIRE | 0.4208 | Not recorded | 6a06a89bdbc836b87d82a087 | | UMPIRE | 0.4209 | Not recorded | 6a06a89bdbc836b87d82a087 | | EGN | 0.4232 | Not recorded | 6a06a89bdbc836b87d82a087 | | UMPIRE | 0.4249 | Not recorded | 6a06a89bdbc836b87d82a087 | | EGN | 0.4294 | Not recorded | 6a06a89bdbc836b87d82a087 | | mclSTExp | 0.4307 | Not recorded | 6a06a89bdbc836b87d82a087 | | His2ST | 0.4399 | Not recorded | 6a06a89bdbc836b87d82a087 | | His2ST | 0.4419 | Not recorded | 6a06a89bdbc836b87d82a087 | | His2ST | 0.4517 | Not recorded | 6a06a89bdbc836b87d82a087 | | ST-Net | 0.4745 | Not recorded | 6a06a89bdbc836b87d82a087 | | ST-Net | 0.4849 | Not recorded | 6a06a89bdbc836b87d82a087 | | mclSTExp | 0.5141 | Not recorded | 6a06a89bdbc836b87d82a087 | | SCR2Net | 0.5848 | Not recorded | 6940e7e3456146936284fcc1 | | BLEEP | 0.6266 | Not recorded | 6940e7e3456146936284fcc1 | | ST-Net | 0.6318 | Not recorded | 6940e7e3456146936284fcc1 | | mc1STExp | 0.6472 | Not recorded | 6940e7e3456146936284fcc1 | | HisToGene | 0.6521 | Not recorded | 6940e7e3456146936284fcc1 | | EGN | 0.6662 | Not recorded | 6940e7e3456146936284fcc1 | | TRIPLEX | 0.6672 | Not recorded | 6940e7e3456146936284fcc1 | | His2ST | 0.6999 | Not recorded | 6940e7e3456146936284fcc1 | ### DUET MSE: 0.2886. Result ID: 6a06ce0647f34ce924ee1cec. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### DUET MSE: 0.2959. Result ID: 6a06ce0647f34ce924ee1cf4. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### DUET MSE: 0.3095. Result ID: 6a06ce0647f34ce924ee1cfc. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### BLEEP MSE: 0.3539. Result ID: 6a06ce0647f34ce924ee1cf8. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### BLEEP MSE: 0.3593. Result ID: 6a06ce0647f34ce924ee1cf0. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### BLEEP MSE: 0.3738. Result ID: 6a06ce0647f34ce924ee1ce8. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### OmiCLIP MSE: 0.3903. Result ID: 6a06ce0647f34ce924ee1cf2. [Reporting paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### OmiCLIP MSE: 0.3945. Result ID: 6a06ce0647f34ce924ee1cea. [Reporting paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### OmiCLIP MSE: 0.4007. Result ID: 6a06ce0647f34ce924ee1cfa. [Reporting paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### mclSTExp MSE: 0.4073. Result ID: 6a06ce0647f34ce924ee1cf9. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### ST-Net MSE: 0.4126. Result ID: 6a06ce0647f34ce924ee1ce5. [Reporting paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### EGN MSE: 0.4164. Result ID: 6a06ce0647f34ce924ee1cef. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### UMPIRE MSE: 0.4208. Result ID: 6a06ce0647f34ce924ee1cf3. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### UMPIRE MSE: 0.4209. Result ID: 6a06ce0647f34ce924ee1ceb. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### EGN MSE: 0.4232. Result ID: 6a06ce0647f34ce924ee1cf7. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### UMPIRE MSE: 0.4249. Result ID: 6a06ce0647f34ce924ee1cfb. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### EGN MSE: 0.4294. Result ID: 6a06ce0647f34ce924ee1ce7. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### mclSTExp MSE: 0.4307. Result ID: 6a06ce0647f34ce924ee1cf1. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### His2ST MSE: 0.4399. Result ID: 6a06ce0647f34ce924ee1cee. [Reporting paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### His2ST MSE: 0.4419. Result ID: 6a06ce0647f34ce924ee1cf6. [Reporting paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### His2ST MSE: 0.4517. Result ID: 6a06ce0647f34ce924ee1ce6. [Reporting paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### ST-Net MSE: 0.4745. Result ID: 6a06ce0647f34ce924ee1ced. [Reporting paper]() Recorded evaluation configuration: {"HVG":"300"}. This record does not assert independent reproduction. ### ST-Net MSE: 0.4849. Result ID: 6a06ce0647f34ce924ee1cf5. [Reporting paper]() Recorded evaluation configuration: {"HVG":"500"}. This record does not assert independent reproduction. ### mclSTExp MSE: 0.5141. Result ID: 6a06ce0647f34ce924ee1ce9. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"HVG":"100"}. This record does not assert independent reproduction. ### SCR2Net MSE: 0.5848. Result ID: 699845185698665ec4a1c351. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### BLEEP MSE: 0.6266. Result ID: 699845185698665ec4a1c34f. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### ST-Net MSE: 0.6318. Result ID: 699845185698665ec4a1c34a. [Reporting paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### mc1STExp MSE: 0.6472. Result ID: 699845185698665ec4a1c350. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### HisToGene MSE: 0.6521. Result ID: 699845185698665ec4a1c34c. [Reporting paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### EGN MSE: 0.6662. Result ID: 699845185698665ec4a1c34d. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### TRIPLEX MSE: 0.6672. Result ID: 699845185698665ec4a1c34e. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. ### His2ST MSE: 0.6999. Result ID: 699845185698665ec4a1c34b. [Reporting paper]() Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction. Page 1 of 1. This is an index page, not the full collection.