# Gene expression dynamics prediction on Hematopoiesis Erythroid lineage (test)

Source: [Gene expression dynamics prediction on Hematopoiesis Erythroid lineage (test)](<https://www.sota2.com/research/sota/gene-expression-dynamics-prediction-on-hematopoiesis-erythroid-lineage-test>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-02-26T06:04:31.665Z

Evaluation of models predicting gene expression dynamics specifically within the Erythroid lineage subset of the Hematopoiesis dataset, assessed on the test split.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Gene expression dynamics prediction |
| Dataset (including any stated split) | Hematopoesis Erythroid lineage (test) |
| Metric | Sparsity |
| Unit | PERCENT |
| Direction | Lower is better |
| Results loaded | 12 of 12 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [Sparsity](<https://www.sota2.com/research/sota/gene-expression-dynamics-prediction-on-hematopoiesis-erythroid-lineage-test.md?metric=Sparsity>): Lower is better; unit: PERCENT.

- [OutDeg](<https://www.sota2.com/research/sota/gene-expression-dynamics-prediction-on-hematopoiesis-erythroid-lineage-test.md?metric=OutDeg>): Higher is better; unit: SCALAR.

- [Test MSE](<https://www.sota2.com/research/sota/gene-expression-dynamics-prediction-on-hematopoiesis-erythroid-lineage-test.md?metric=Test%20MSE>): Lower is better; unit: SCALAR.

## Recorded results

| Method | Sparsity | Result date | Report paper |
| --- | --- | --- | --- |
| None/Baseline | 0.0025 | Not recorded | 68fa5f6e1e209131ce9e9cf7 |
| C-NODE | 0.0133 | Not recorded | 68fa5f6e1e209131ce9e9cf7 |
| PINN | 0.0593 | Not recorded | 68fa5f6e1e209131ce9e9cf7 |
| L0 | 0.1203 | Not recorded | 68fa5f6e1e209131ce9e9cf7 |
| PathReg | 0.1394 | Not recorded | 68fa5f6e1e209131ce9e9cf7 |
| IMP | 0.73 | Not recorded | 68fa5f6e1e209131ce9e9cf7 |
| Iter. SynFlow | 0.8228 | Not recorded | 68fa5f6e1e209131ce9e9cf7 |
| BioPrune | 0.8709 | Not recorded | 68fa5f6e1e209131ce9e9cf7 |
| DST | 0.9054 | Not recorded | 68fa5f6e1e209131ce9e9cf7 |
| PINN + MP | 0.92 | Not recorded | 68fa5f6e1e209131ce9e9cf7 |
| SparseFlow | 0.9444 | Not recorded | 68fa5f6e1e209131ce9e9cf7 |
| DASH | 0.9595 | Not recorded | 68fa5f6e1e209131ce9e9cf7 |

### None/Baseline

Sparsity: 0.0025. Result ID: 698bc6fd7a967eddb77146a9.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### C-NODE

Sparsity: 0.0133. Result ID: 698bc6fd7a967eddb77146ab.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa76cc1e209131cea6f218.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### PINN

Sparsity: 0.0593. Result ID: 698bc6fd7a967eddb77146ad.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

Recorded evaluation configuration: {"Prior information":true}. This record does not assert independent reproduction.

### L0

Sparsity: 0.1203. Result ID: 698bc6fd7a967eddb77146aa.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa647d1e209131cea04d19.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### PathReg

Sparsity: 0.1394. Result ID: 698bc6fd7a967eddb77146ac.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6dc21e209131cea3be2b.md>)

[Implementation](<https://github.com/theislab/PathReg>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### IMP

Sparsity: 0.73. Result ID: 698bc6fd7a967eddb77146af.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa656f1e209131cea0a651.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### Iter. SynFlow

Sparsity: 0.8228. Result ID: 698bc6fd7a967eddb77146b0.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa3d821e209131ce8e0b67.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### BioPrune

Sparsity: 0.8709. Result ID: 698bc6fd7a967eddb77146b2.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

[Implementation](<https://github.com/QuackenbushLab/DASH>)

Recorded evaluation configuration: {"Prior information":true}. This record does not assert independent reproduction.

### DST

Sparsity: 0.9054. Result ID: 698bc6fd7a967eddb77146ae.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa67881e209131cea16aff.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### PINN + MP

Sparsity: 0.92. Result ID: 698bc6fd7a967eddb77146b4.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

[Implementation](<https://github.com/QuackenbushLab/DASH>)

Recorded evaluation configuration: {"Prior information":true}. This record does not assert independent reproduction.

### SparseFlow

Sparsity: 0.9444. Result ID: 698bc6fd7a967eddb77146b1.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa6b421e209131cea2d093.md>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### DASH

Sparsity: 0.9595. Result ID: 698bc6fd7a967eddb77146b3.

[Reporting paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa5f6e1e209131ce9e9cf7.md>)

[Implementation](<https://github.com/QuackenbushLab/DASH>)

Recorded evaluation configuration: {"Prior information":true,"Optimal Lambda":"(0.80, 0.80)"}. This record does not assert independent reproduction.

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