# End-to-end Structure Extraction on BIOVISTA

Source: [End-to-end Structure Extraction on BIOVISTA](<https://www.sota2.com/research/sota/end-to-end-structure-extraction-on-biovista>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-04-24T08:21:17.950Z

Evaluation of End-to-end Structure Extraction performance on the BIOVISTA dataset, measured using Recall, Precision, and F1 scores.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | End-to-end Structure Extraction |
| Dataset (including any stated split) | BIOVISTA |
| Metric | Recall |
| Unit | SCALAR |
| Direction | Higher is better |
| Results loaded | 8 of 8 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [Recall](<https://www.sota2.com/research/sota/end-to-end-structure-extraction-on-biovista.md?metric=Recall>): Higher is better; unit: SCALAR.

- [Precision](<https://www.sota2.com/research/sota/end-to-end-structure-extraction-on-biovista.md?metric=Precision>): Higher is better; unit: SCALAR.

- [F1 Score](<https://www.sota2.com/research/sota/end-to-end-structure-extraction-on-biovista.md?metric=F1%20Score>): Higher is better; unit: SCALAR.

## Recorded results

| Method | Recall | Result date | Report paper |
| --- | --- | --- | --- |
| BIOMINER-INSTRUCT | 0.516 | Not recorded | 69eaf93355a3c32af89f8a85 |
| Gemini 2.0-flash | 0.482 | Not recorded | 69eaf93355a3c32af89f8a85 |
| Qwen3-VL-235B | 0.462 | Not recorded | 69eaf93355a3c32af89f8a85 |
| GPT-4.1-mini | 0.413 | Not recorded | 69eaf93355a3c32af89f8a85 |
| Grok-4-fast | 0.413 | Not recorded | 69eaf93355a3c32af89f8a85 |
| Qwen3-VL-32B | 0.406 | Not recorded | 69eaf93355a3c32af89f8a85 |
| GPT-4o-mini | 0.31 | Not recorded | 69eaf93355a3c32af89f8a85 |
| Claude haiku-4-5 | 0.269 | Not recorded | 69eaf93355a3c32af89f8a85 |

### BIOMINER-INSTRUCT

Recall: 0.516. Result ID: 69eb27eb47f34ce924d35b3e.

[Reporting paper](<https://www.sota2.com/research/paper/69eaf93355a3c32af89f8a85.md>)

[Method origin paper](<https://www.sota2.com/research/paper/69eaf93355a3c32af89f8a85.md>)

Recorded evaluation configuration: {"Coreference Status":"w/ Coreference"}. This record does not assert independent reproduction.

### Gemini 2.0-flash

Recall: 0.482. Result ID: 69eb27eb47f34ce924d35b37.

[Reporting paper](<https://www.sota2.com/research/paper/69eaf93355a3c32af89f8a85.md>)

Recorded evaluation configuration: {"Coreference Status":"w/ Coreference"}. This record does not assert independent reproduction.

### Qwen3-VL-235B

Recall: 0.462. Result ID: 69eb27eb47f34ce924d35b3d.

[Reporting paper](<https://www.sota2.com/research/paper/69eaf93355a3c32af89f8a85.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa70d41e209131cea4d774.md>)

[Implementation](<https://github.com/QwenLM/Qwen-VL>)

Recorded evaluation configuration: {"Coreference Status":"w/ Coreference"}. This record does not assert independent reproduction.

### GPT-4.1-mini

Recall: 0.413. Result ID: 69eb27eb47f34ce924d35b39.

[Reporting paper](<https://www.sota2.com/research/paper/69eaf93355a3c32af89f8a85.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa75681e209131cea67a98.md>)

Recorded evaluation configuration: {"Coreference Status":"w/ Coreference"}. This record does not assert independent reproduction.

### Grok-4-fast

Recall: 0.413. Result ID: 69eb27eb47f34ce924d35b3a.

[Reporting paper](<https://www.sota2.com/research/paper/69eaf93355a3c32af89f8a85.md>)

Recorded evaluation configuration: {"Coreference Status":"w/ Coreference"}. This record does not assert independent reproduction.

### Qwen3-VL-32B

Recall: 0.406. Result ID: 69eb27eb47f34ce924d35b3c.

[Reporting paper](<https://www.sota2.com/research/paper/69eaf93355a3c32af89f8a85.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa70d41e209131cea4d774.md>)

[Implementation](<https://github.com/QwenLM/Qwen-VL>)

Recorded evaluation configuration: {"Coreference Status":"w/ Coreference"}. This record does not assert independent reproduction.

### GPT-4o-mini

Recall: 0.31. Result ID: 69eb27eb47f34ce924d35b38.

[Reporting paper](<https://www.sota2.com/research/paper/69eaf93355a3c32af89f8a85.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa75681e209131cea67a98.md>)

Recorded evaluation configuration: {"Coreference Status":"w/ Coreference"}. This record does not assert independent reproduction.

### Claude haiku-4-5

Recall: 0.269. Result ID: 69eb27eb47f34ce924d35b3b.

[Reporting paper](<https://www.sota2.com/research/paper/69eaf93355a3c32af89f8a85.md>)

Recorded evaluation configuration: {"Coreference Status":"w/ Coreference"}. This record does not assert independent reproduction.

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