# Cell detection on TRAGEN

Source: [Cell detection on TRAGEN](<https://www.sota2.com/research/sota/cell-detection-on-tragen>)

Collection index: [llms.txt](<https://www.sota2.com/research/llms.txt>)

Data updated: 2026-02-26T05:23:06.720Z

Evaluation of cell detection performance on the TRAGEN dataset, typically measured using Average Precision across various Intersection over Union (IoU) thresholds.

A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage.

| Scope | Recorded value |
| --- | --- |
| Task | Cell detection |
| Dataset (including any stated split) | TRAGEN |
| Metric | AP (IoU=0.50) |
| Unit | PERCENT |
| Direction | Higher is better |
| Results loaded | 4 of 4 |
| Coverage | All results currently returned for this benchmark |

Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol.

## Metrics

- [AP (IoU=0.50)](<https://www.sota2.com/research/sota/cell-detection-on-tragen.md?metric=AP%20(IoU%3D0.50)>): Higher is better; unit: PERCENT.

- [AP (IoU=0.55)](<https://www.sota2.com/research/sota/cell-detection-on-tragen.md?metric=AP%20(IoU%3D0.55)>): Higher is better; unit: PERCENT.

- [AP (IoU=0.60)](<https://www.sota2.com/research/sota/cell-detection-on-tragen.md?metric=AP%20(IoU%3D0.60)>): Higher is better; unit: PERCENT.

- [AP (IoU=0.65)](<https://www.sota2.com/research/sota/cell-detection-on-tragen.md?metric=AP%20(IoU%3D0.65)>): Higher is better; unit: PERCENT.

- [AP (IoU=0.70)](<https://www.sota2.com/research/sota/cell-detection-on-tragen.md?metric=AP%20(IoU%3D0.70)>): Higher is better; unit: PERCENT.

- [AP (IoU=0.75)](<https://www.sota2.com/research/sota/cell-detection-on-tragen.md?metric=AP%20(IoU%3D0.75)>): Higher is better; unit: PERCENT.

- [AP (IoU=0.80)](<https://www.sota2.com/research/sota/cell-detection-on-tragen.md?metric=AP%20(IoU%3D0.80)>): Higher is better; unit: PERCENT.

- [AP (IoU=0.85)](<https://www.sota2.com/research/sota/cell-detection-on-tragen.md?metric=AP%20(IoU%3D0.85)>): Higher is better; unit: PERCENT.

- [AP (IoU=0.90)](<https://www.sota2.com/research/sota/cell-detection-on-tragen.md?metric=AP%20(IoU%3D0.90)>): Higher is better; unit: PERCENT.

## Recorded results

| Method | AP (IoU=0.50) | Result date | Report paper |
| --- | --- | --- | --- |
| StarDist | 99.84 | Not recorded | 68fa65001e209131cea07bd4 |
| Mask R-CNN | 99.24 | Not recorded | 68fa65001e209131cea07bd4 |
| U-Net | 99.18 | Not recorded | 68fa65001e209131cea07bd4 |
| U-Net | 90.3 | Not recorded | 68fa65001e209131cea07bd4 |

### StarDist

AP (IoU=0.50): 99.84. Result ID: 698c97720b614d12cff1ce4f.

[Reporting paper](<https://www.sota2.com/research/paper/68fa65001e209131cea07bd4.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa65001e209131cea07bd4.md>)

[Implementation](<https://github.com/mpicbg-csbd/stardist>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### Mask R-CNN

AP (IoU=0.50): 99.24. Result ID: 698c97720b614d12cff1ce4e.

[Reporting paper](<https://www.sota2.com/research/paper/68fa65001e209131cea07bd4.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa63f21e209131cea01b22.md>)

[Implementation](<https://github.com/facebookresearch/Detectron>)

Recorded evaluation configuration: Not recorded. This record does not assert independent reproduction.

### U-Net

AP (IoU=0.50): 99.18. Result ID: 698c97720b614d12cff1ce4d.

[Reporting paper](<https://www.sota2.com/research/paper/68fa65001e209131cea07bd4.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa61e11e209131ce9f653d.md>)

[Implementation](<http://lmb.informatik.uni-freiburg.de/people/ronneber/u-net>)

Recorded evaluation configuration: {"segmentation\_mode":"3 class"}. This record does not assert independent reproduction.

### U-Net

AP (IoU=0.50): 90.3. Result ID: 698c97720b614d12cff1ce4c.

[Reporting paper](<https://www.sota2.com/research/paper/68fa65001e209131cea07bd4.md>)

[Method origin paper](<https://www.sota2.com/research/paper/68fa61e11e209131ce9f653d.md>)

[Implementation](<http://lmb.informatik.uni-freiburg.de/people/ronneber/u-net>)

Recorded evaluation configuration: {"segmentation\_mode":"2 class"}. This record does not assert independent reproduction.

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